Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_O03
(1024 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 42 1e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.004
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.15
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.80
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 9.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 41.9 bits (94), Expect = 1e-04
Identities = 37/138 (26%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Frame = +3
Query: 465 PXXXPPPSXTPXXSXXPPXPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTP---XX 635
P PP P S PP P P P P P S P P P
Sbjct: 1027 PSADAPPIPVP--STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Query: 636 XPXPXXXPPXPXKHNXXXXQXPXXXPXXXPXPXXXXAPP*XXP-XSXPXLXXAXFXLGPS 812
P P PP P K + P P P APP P + P + P
Sbjct: 1085 VPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG--APP 1141
Query: 813 XXXPSTTXPPLPXQXPXP 866
PS PP+P P
Sbjct: 1142 VPKPSVAAPPVPAPSGAP 1159
Score = 35.9 bits (79), Expect = 0.009
Identities = 39/173 (22%), Positives = 43/173 (24%), Gaps = 3/173 (1%)
Frame = +3
Query: 339 PPXPXXXXPPPXXEXXPXPPXKXXXXSXXXXPXXXHXXXXXXPXXXPPPSXTPXXSXXPP 518
P P PP PP P P PP + + P
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
Query: 519 XPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTPXXXPXP---XXXPPXPXKHNXXX 689
P PS P P P PK P+ P P PP P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK-PSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 690 XQXPXXXPXXXPXPXXXXAPP*XXPXSXPXLXXAXFXLGPSXXXPSTTXPPLP 848
P P P APP P A P PS PP+P
Sbjct: 1123 VPKPSV--AAPPVPVPSGAPPVPKPSVAAPPVPAPSG-APPVPKPSVAAPPVP 1172
Score = 35.1 bits (77), Expect = 0.016
Identities = 34/170 (20%), Positives = 41/170 (24%)
Frame = +3
Query: 339 PPXPXXXXPPPXXEXXPXPPXKXXXXSXXXXPXXXHXXXXXXPXXXPPPSXTPXXSXXPP 518
P P PP PP + P PP P + PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA-PP 1132
Query: 519 XPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTPXXXPXPXXXPPXPXKHNXXXXQX 698
P P + P P P P PP P
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 699 PXXXPXXXPXPXXXXAPP*XXPXSXPXLXXAXFXLGPSXXXPSTTXPPLP 848
P P P PP P + P + L P P+ PP+P
Sbjct: 1193 PPSEAPPVPKP-SVGVPPVPPPSTAPPVPTPSAGL-PPVPVPTAKAPPVP 1240
Score = 29.9 bits (64), Expect = 0.60
Identities = 25/99 (25%), Positives = 26/99 (26%)
Frame = +3
Query: 333 PPPPXPXXXXPPPXXEXXPXPPXKXXXXSXXXXPXXXHXXXXXXPXXXPPPSXTPXXSXX 512
PP P P PP PP P P PP P S
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP--VPPPSTA 1216
Query: 513 PPXPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTP 629
PP P P + P P P S P TP
Sbjct: 1217 PPVP--TPSAGLPPVPVPTAKAP-PVPAPSSEAPSVSTP 1252
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.1 bits (82), Expect = 0.004
Identities = 43/183 (23%), Positives = 47/183 (25%), Gaps = 3/183 (1%)
Frame = +3
Query: 333 PPPPXPXXXXPPPXXEXXPXPPXKXXXXSXXXXPXXXHXXXXXXPXXXPPPSXTPXXSXX 512
PPP + P PP + P P PPP S
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS-I 351
Query: 513 PPXPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTPXXXPXP-XXXPPXPXKHNXXX 689
P P P P PL S NP P P P N
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 690 XQXPXXXPXXXPXPXXXXAPP*XXPXSXPXLXXAXFXLGPSXXXPSTTXPPLPXQXP--X 863
P P P APP P + P L P + PPLP P
Sbjct: 412 TSTP---PVPTPPSLPPSAPPSLPPSAPPSLPMGA-PAAPPLPPSAPIAPPLPAGMPAAP 467
Query: 864 PLP 872
PLP
Sbjct: 468 PLP 470
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 333 PPPPXPXXXXPPPXXEXXPXPPXKXXXXSXXXXPXXXHXXXXXXPXXXPPP 485
PPPP P P P P PP P P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 799 LWAPPXXPPARXXP-PSPXKXPXPXXXXXXHXPHPXXXXP 915
L +PP PPA P P+P P P P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.80
Identities = 33/132 (25%), Positives = 38/132 (28%), Gaps = 4/132 (3%)
Frame = +3
Query: 465 PXXXPPPSXTPXXSXXPPXPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPT---PXX 635
P P S + PP P P + I P P L P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 636 XPXPXXXPPXPXK-HNXXXXQXPXXXPXXXPXPXXXXAPP*XXPXSXPXLXXAXFXLGPS 812
P PP P K Q P P APP + GPS
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAPVANTSSRP---SSFAPPAGHAPNVTSESPKFPNRGPS 244
Query: 813 XXXPSTTXPPLP 848
PS + PP+P
Sbjct: 245 --IPSASVPPVP 254
Score = 27.1 bits (57), Expect = 4.3
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Frame = +3
Query: 612 PKNPTPXXX-PXPXXXPPXPXKHNXXXXQXPXXXPXXXPXPXXXXAPP*XXPXSXPXLXX 788
P PTP P PP P P P P P APP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRP--------SIPPPSPASAP-PIPSKAPPIPSSLPPPAQPA 178
Query: 789 AXFXLGPSXXXPSTTXPPLPXQXPXP 866
A PS + PP+P + P P
Sbjct: 179 APVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +3
Query: 465 PXXXPPPSXTPXXSXXPPXPXXPXXXXXP 551
P PPP P PP P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 8/21 (38%), Positives = 8/21 (38%)
Frame = +3
Query: 336 PPPXPXXXXPPPXXEXXPXPP 398
PP P PP P PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPP 1710
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 333 PPPPXPXXXXPPPXXEXXPXPP 398
PPPP P PP P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/61 (22%), Positives = 18/61 (29%)
Frame = +3
Query: 495 PXXSXXPPXPXXPXXXXXPSXXIXXXXTPXPXPLKSXXXPKNPTPXXXPXPXXXPPXPXK 674
P + P P P+ + P PL P+ P P P P P
Sbjct: 92 PLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPETNC 151
Query: 675 H 677
H
Sbjct: 152 H 152
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/54 (24%), Positives = 17/54 (31%)
Frame = +2
Query: 338 SPXPXXXXPPPPXXNXPPXPPEXXXXXXXKXPXSXXXXXSXXPXSXXXPXXNPP 499
+P P P P + PP PP P S P + +PP
Sbjct: 728 TPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESPP 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.141 0.491
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,130
Number of Sequences: 5004
Number of extensions: 24547
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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