Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_O01
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 4e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 38 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.016
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.26
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.45
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.59
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.59
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.4
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.5
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 40.3 bits (90), Expect = 4e-04
Identities = 33/147 (22%), Positives = 35/147 (23%), Gaps = 1/147 (0%)
Frame = +1
Query: 451 PXPXXXXPGGP-PXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXXPPAPXX 627
P P P P P PP P PP + P PP P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Query: 628 XXXGPXPXXPXPXPPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPPPXXXXPXXXXXX 807
P P PP P+ P P P P P P P
Sbjct: 1127 SVAAPPVPVPSGAPPVPK-PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Query: 808 XXXXGPXPPPXXXXXXPXXPXXXPXXP 888
P PPP P P P
Sbjct: 1186 AGVP-PVPPPSEAPPVPKPSVGVPPVP 1211
Score = 36.7 bits (81), Expect = 0.005
Identities = 35/149 (23%), Positives = 35/149 (23%), Gaps = 1/149 (0%)
Frame = +3
Query: 456 PXXXXAGGAPPXXXPXXXXXXXXPXXXXXXXXXPXXXXGXGPXXXPXXXPXXPXPPXXGP 635
P GAPP P P P P P P P P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV--AVPPVPAPSGAPPVPKPSVAAP 1131
Query: 636 GXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXP-XXXPPXXXXXXXXXPXXX 812
P P P P P P P P P P P PP P
Sbjct: 1132 ------PVPVPSGAPPVPKPSVAAPPVPAPSGAP--PVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 813 XPXXXPPXXXXXXXPPXXXXXXXXPPXXP 899
PP PP PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 34.7 bits (76), Expect = 0.021
Identities = 25/87 (28%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Frame = -2
Query: 484 GAPPAXXXXGXGXPXXXPXXAX-APRPRXXXPRAREXPXXPPPXRGPGXPGXPXPXXXXX 308
GAPP P P A P+P P P PP P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV-PAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 307 GARGPREPXXSKGXTXPXPPRQAPPXP 227
P P + G PP +APP P
Sbjct: 1178 I---PPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 33.9 bits (74), Expect = 0.036
Identities = 27/115 (23%), Positives = 29/115 (25%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 PXPXXXXPGGP-PXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXXPPAPXX 627
P P P P P PP P PP + P PP P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Query: 628 XXXGPXPXXPXPX-PPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPPPXXXXP 789
P P PP P+ P P P P PPP P
Sbjct: 1165 SVAAPPVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 33.9 bits (74), Expect = 0.036
Identities = 27/89 (30%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Frame = -2
Query: 484 GAPPAXXXXGXGXPXXXPXXAX-APRPRXXXPRAREXPXXPPPXRGP--GXPGXPXPXXX 314
GAPP P P A P+P P PP P G P P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP--- 1194
Query: 313 XXGARGPREPXXSKGXTXPXPPRQAPPXP 227
+ P P S G PP APP P
Sbjct: 1195 ---SEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 32.7 bits (71), Expect = 0.084
Identities = 24/100 (24%), Positives = 24/100 (24%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXP 770
P P PP P P P PP P P P P P P P P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA-PSSGIPPVPKPAAG-VPPVPPPSEAP 1198
Query: 771 PXXXXXXXXXPXXXXPXXXPPXXXXXXXPPXXXXXXXXPP 890
P P P PP PP
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 31.5 bits (68), Expect = 0.19
Identities = 24/104 (23%), Positives = 24/104 (23%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXP 758
P P P P P P P P P P P P P P P P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV--PAPSGIP--PVPKP 1097
Query: 759 XXXPPXXXXXXXXXPXXXXPXXXPPXXXXXXXPPXXXXXXXXPP 890
P P P PP P PP
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 30.3 bits (65), Expect = 0.45
Identities = 25/94 (26%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Frame = +1
Query: 436 GXXGXPXPXXXXPGGP-PXXXPPXXXXX-PXXPXXXXXXXXPPXXXXAXGXXXXPXXXXX 609
G P P P P P PP P PP A G P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197
Query: 610 PPAPXXXXXGPXPXXPXPXPPXPRXPXXXXXPXP 711
PP P P P PP P P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVP-TPSAGLPPVP 1230
Score = 30.3 bits (65), Expect = 0.45
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 1/107 (0%)
Frame = +3
Query: 456 PXXXXAGGAPPXXXPXXXXXXXXPXXXXXXXXXPXXXXGXGPXXXPXXXPXXPXPPXXGP 635
P GAPP P P P G P P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 636 GXXXXXPXPXPPXPPXPXXPXXPXXXXPXP-PXXPXXPXPXPXXXPP 773
P PP P P P P P P P P P
Sbjct: 1209 --------PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 29.9 bits (64), Expect = 0.59
Identities = 28/145 (19%), Positives = 28/145 (19%), Gaps = 1/145 (0%)
Frame = +1
Query: 457 PXXXXPGGPPXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXXPPAPXXXXX 636
P P P PP P P P PP P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058
Query: 637 GPXPXXPXPXPPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPP-PXXXXPXXXXXXXX 813
P P P P P P P P PP P
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 814 XXGPXPPPXXXXXXPXXPXXXPXXP 888
P P P P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 29.9 bits (64), Expect = 0.59
Identities = 20/81 (24%), Positives = 20/81 (24%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXP 770
P P PP P P PP P P P PP P P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVP---PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 771 PXXXXXXXXXPXXXXPXXXPP 833
P P P P
Sbjct: 1227 PPVPVPTAKAPPVPAPSSEAP 1247
Score = 29.5 bits (63), Expect = 0.78
Identities = 27/120 (22%), Positives = 29/120 (24%), Gaps = 2/120 (1%)
Frame = +1
Query: 436 GXXGXPXPXXXXPGGP-PXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXX- 609
G P P P P P PP P PP + P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 610 PPAPXXXXXGPXPXXPXPXPPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPPPXXXXP 789
PP P P P PP P+ P P P P P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 27.5 bits (58), Expect = 3.2
Identities = 21/95 (22%), Positives = 21/95 (22%), Gaps = 1/95 (1%)
Frame = +3
Query: 618 PPXXGPGXXXXXPXPXPPXPPXPXXPXX-PXXXXPXPPXXPXXPXPXPXXXPPXXXXXXX 794
PP P PP P P P P P P P P
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA 1029
Query: 795 XXPXXXXPXXXPPXXXXXXXPPXXXXXXXXPPXXP 899
P P PP PP P P
Sbjct: 1030 DAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Score = 27.5 bits (58), Expect = 3.2
Identities = 28/141 (19%), Positives = 29/141 (20%), Gaps = 2/141 (1%)
Frame = +1
Query: 472 PGGPPXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXXPPAPXXXXXGPXPX 651
P P P P PP + P PP P P P
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Query: 652 XPXPXPPXPRXPXXXXXPXPXXPXP--XXXXXXPXXXPXXPPPXXXXPXXXXXXXXXXGP 825
P P P P P P P P P P P
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP-P 1113
Query: 826 XPPPXXXXXXPXXPXXXPXXP 888
P P P P P
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVP 1134
Score = 26.6 bits (56), Expect = 5.5
Identities = 30/143 (20%), Positives = 30/143 (20%), Gaps = 5/143 (3%)
Frame = +2
Query: 476 GGPPXXXPXXXPXXPXXXXXXXXXXXP-----PXXXGXGAXXXXPXXPXXPXPPXPXXXX 640
G PP P P P P P GA P P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 641 PXPGXXXXXPXXPXXPXXXXXPXXXXPPPXXAXXPXPXXXXXPPPXXPXPXXXPXXXXPX 820
P P P P P P A P P PP P P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPK-----PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 821 XXXPXXXXXXXXPXXXXXXPXPP 889
P P PP
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 25.8 bits (54), Expect = 9.7
Identities = 20/84 (23%), Positives = 21/84 (25%), Gaps = 3/84 (3%)
Frame = +1
Query: 436 GXXGXPXPXXXXPG--GPPXXXPPXXXXXPXXPXXXXXXXXPPXXXXAXGXXXXPXXXXX 609
G P P P P PP P PP + G P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 610 PPAP-XXXXXGPXPXXPXPXPPXP 678
PP P P P PP P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXP---PXPXXPXXPXXXXPXPPXXPXXPXPXPX 761
P P P P P P PP P P P P P P P P P P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 762 XXPP 773
PP
Sbjct: 200 KVPP 203
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXP 752
P P P P P P P P P P P PP P P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 29.5 bits (63), Expect = 0.78
Identities = 17/72 (23%), Positives = 18/72 (25%)
Frame = +2
Query: 602 PXXPXPPXPXXXXPXPGXXXXXPXXPXXPXXXXXPXXXXPPPXXAXXPXPXXXXXPPPXX 781
P P PP P P P P P PP + P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 782 PXPXXXPXXXXP 817
P P P
Sbjct: 185 PSAPSLPSAVPP 196
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/82 (24%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXP-XPXXX 767
P P P P P P P P P P P P P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 768 PPXXXXXXXXXPXXXXPXXXPP 833
PP P PP
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/76 (23%), Positives = 19/76 (25%), Gaps = 3/76 (3%)
Frame = +1
Query: 661 PXPPXPRX---PXXXXXPXPXXPXPXXXXXXPXXXPXXPPPXXXXPXXXXXXXXXXGPXP 831
P PP P+ P P P P P P P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 832 PPXXXXXXPXXPXXXP 879
P P P P
Sbjct: 188 PSLPSAVPPMPPKVPP 203
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.016
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +3
Query: 591 PXXXPXXPX--PPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXX 764
P P P PP P P P P P P P PP P P P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 765 XP 770
P
Sbjct: 481 AP 482
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXP 758
P P P P G P P PP P P P P P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/73 (26%), Positives = 22/73 (30%)
Frame = -2
Query: 445 PXXXPXXAXAPRPRXXXPRAREXPXXPPPXRGPGXPGXPXPXXXXXGARGPREPXXSKGX 266
P P + A P+ R P PPP P P P P P +
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA--- 394
Query: 265 TXPXPPRQAPPXP 227
P R AP P
Sbjct: 395 ---IPGRSAPALP 404
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/51 (27%), Positives = 14/51 (27%)
Frame = +3
Query: 618 PPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXP 770
PP P P PP P P P P P P P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = -2
Query: 424 AXAPRPRXXXPRAREXPXXPPPXRGPGXPGXPXPXXXXXGARGPREPXXSKGXT--XPXP 251
A RP P +R PP G P P P +G + P P
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 250 PRQAP 236
PR AP
Sbjct: 366 PRSAP 370
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/57 (24%), Positives = 14/57 (24%)
Frame = +3
Query: 603 PXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPP 773
P P PP P PP P P PP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.26
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 666 PPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPPXXXXXXXXXPXXXXP 818
PP PP P P PP P P P PP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.26
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPP 680
P P P PP PG P P PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 612 PXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPP 773
P PP P P P PP P P P PP P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXP 686
P P P PP P P PP PP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 9.7
Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -2
Query: 433 PXXAXAPRPRXXXPRAREXPXXPPPXRGPGXPGXPXPXXXXXGARGPREPXXSKGXTXPX 254
P A AP P P PPP G G P P P P S G +
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP--------PPPPAVSAGGSRYY 793
Query: 253 PPR-QAPPXP 227
P QA P P
Sbjct: 794 APAPQAEPEP 803
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/61 (27%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 PXXXPXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXP-PXXPXXPXPX 755
P P P PP P PP P P P P P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
Query: 756 P 758
P
Sbjct: 1746 P 1746
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 666 PPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPP 773
PP P P P P PP P P P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPP-PPSAPPMPAGPPSAPPP 1733
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.59
Identities = 22/76 (28%), Positives = 22/76 (28%)
Frame = -1
Query: 836 GGGXGPXXXXXXXXXXGXXXXGGGXXGXXXGXXXXXXGXGXXGXGXXXXXGXRGXGGXGX 657
GG GP G GG G G G G G G G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGF---GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 656 GXXGXGPXXXXXGAGG 609
G G GP G GG
Sbjct: 252 GGFGGGPGGFGGGPGG 267
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPP 728
P P P P P P PP P P P P PP
Sbjct: 141 PLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPP 186
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +3
Query: 591 PXXXPXXPXPPXXGPGXXXXXPXPXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXP 758
P P P P P P P P P P P P P P P
Sbjct: 92 PLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +1
Query: 655 PXPXPPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPPP 774
P P P P P P P P P P P P
Sbjct: 108 PLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +3
Query: 660 PXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPP 773
P P P P P P P P P P P P
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLP 136
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 661 PXPPXPRXPXXXXXPXPXXPXPXXXXXXPXXXPXXPPP 774
P P PR P P P P P P P P
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLP 136
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 RGPLAPXXPPXGXGXPGX-PGPRXGGGXXGXSRARGXXXRGR 413
RGPL P G G G GP G G G R G RGR
Sbjct: 103 RGPL--FGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGGRGR 142
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 431 GXGXRXPPXPXXXGRGGPP 487
G G PP P GRG PP
Sbjct: 123 GVGYTAPPPPAGFGRGAPP 141
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 603 PXXPXPPXXGPGXXXXXPXPXPPXPPXP 686
P P PP PG P PP PP P
Sbjct: 6 PGNPPPPPPPPG---FEPPSQPPPPPPP 30
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +3
Query: 660 PXPPXPPXPXXPXXPXXXXPXPPXXPXXPXPXPXXXPP 773
P P PP P P P PP P P P
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.158 0.616
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,360
Number of Sequences: 5004
Number of extensions: 19638
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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