Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O01
         (1007 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    29   0.050
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 29.5 bits (63), Expect = 0.050
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
 Frame = -2

Query: 415 PRPRXXXPRAREXPXXPPPXRGPGXPGXPXPXXXXXGARGPREPXXSKGXTXP-XPPRQA 239
           P+PR   PR R  P   P    P     P P       R  REP    G   P   P+  
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRP----PHPRLRREPEAEPGNNRPVYIPQPR 162

Query: 238 PPXP 227
           PP P
Sbjct: 163 PPHP 166


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
 Frame = +2

Query: 245 PRXGGXGXALAXXRFPXAP---GPPXXXXWPGXSGVPGAP 355
           P  G  G   +  + P AP    PP     P   G PGAP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.158    0.616 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,671
Number of Sequences: 438
Number of extensions: 5478
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33500103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)