Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N22
(982 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.081
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 9.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.081
Identities = 36/140 (25%), Positives = 42/140 (30%), Gaps = 13/140 (9%)
Frame = +1
Query: 550 PXXXGVPXPXXKPXLSQXPKPHPXXXXXPLXXXXGXPXXPXXP-----------XPPXXP 696
P G+P P KP ++ P P P P+ G P P PP
Sbjct: 1086 PAPSGIP-PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Query: 697 AXXXSPLGPPPXGWARCRXXSXVRXPXPA--XXXPXXPRGXARSPXPXXXPXXVXPRTXG 870
+P P P G S P PA P P+ A P P P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPVPKP 1203
Query: 871 XXXVXXPPXXGTXPXGAPXP 930
V P T P P P
Sbjct: 1204 SVGVPPVPPPSTAPP-VPTP 1222
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/99 (21%), Positives = 24/99 (24%)
Frame = +1
Query: 535 PXTXXPXXXGVPXPXXKPXLSQXPKPHPXXXXXPLXXXXGXPXXPXXPXPPXXPAXXXSP 714
P P P P + PKP P P PP P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 715 LGPPPXGWARCRXXSXVRXPXPAXXXPXXPRGXARSPXP 831
+ P G + P PA RS P
Sbjct: 1219 VPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVP 1257
Score = 25.8 bits (54), Expect = 9.3
Identities = 29/125 (23%), Positives = 32/125 (25%)
Frame = +1
Query: 550 PXXXGVPXPXXKPXLSQXPKPHPXXXXXPLXXXXGXPXXPXXPXPPXXPAXXXSPLGPPP 729
P G P + PKP P P PP +P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 730 XGWARCRXXSXVRXPXPAXXXPXXPRGXARSPXPXXXPXXVXPRTXGXXXVXXPPXXGTX 909
G S P PA P G P P V + G V P G
Sbjct: 1137 SGAPPVPKPSVAAPPVPA------PSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVP 1189
Query: 910 PXGAP 924
P P
Sbjct: 1190 PVPPP 1194
Score = 25.8 bits (54), Expect = 9.3
Identities = 27/128 (21%), Positives = 32/128 (25%), Gaps = 4/128 (3%)
Frame = +3
Query: 567 AXPXXKTAIKPXXQTPPXXXXXTPVVKXXXSXPPPXXXSPXXXGXXXXAPXXPPXGLGXV 746
A P + P P P P P +P P P G
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 747 PXVVSGEXXRXGXTGPRXPPGXCXXSXPP-XXXRXGXPPDPXXXXSAXP---PXXRXPAX 914
P E PP + PP G PP P A P P P+
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249
Query: 915 XSXXSXXP 938
+ S P
Sbjct: 1250 STPRSSVP 1257
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.3
Identities = 25/105 (23%), Positives = 30/105 (28%)
Frame = +3
Query: 663 PPPXXXSPXXXGXXXXAPXXPPXGLGXVPXVVSGEXXRXGXTGPRXPPGXCXXSXPPXXX 842
PPP S P P +P + G R T P P S PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPL--GNASRTS-TPPVPTPPSLPPSAPPSLP 432
Query: 843 RXGXPPDPXXXXSAXPPXXRXPAXXSXXSXXPXXTXXAPSAXXPP 977
P P +A P P + P P+A PP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 27.1 bits (57), Expect = 4.0
Identities = 30/137 (21%), Positives = 38/137 (27%), Gaps = 7/137 (5%)
Frame = +1
Query: 574 PXXKPXLSQX-PKPHPXXXXXPLXXXXGXPXXPXXPXP--PXXPAXXXSPLGPPPXGWAR 744
P P LS P P P + P P P P + PL PP +
Sbjct: 242 PERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSA 301
Query: 745 CRXXSXVRXPXPAXXXPXXPRGXAR----SPXPXXXPXXVXPRTXGXXXVXXPPXXGTXP 912
+ + P P RG S P PR+ + PP + P
Sbjct: 302 AALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Query: 913 XGAPXPXXQXQXRXPXP 963
P R P P
Sbjct: 362 PPPPPRSAPSTGRQPPP 378
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +3
Query: 567 AXPXXKTAIKPXXQTPPXXXXXTPVVKXXXSXPPPXXXSPXXXGXXXXAPXXPPXGLGXV 746
A P ++P PP TP S PPP P G P PP
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTP-PPPPMSVPPPPSAPPMPAGPPSAPP--PPLPASSA 1740
Query: 747 PXV 755
P V
Sbjct: 1741 PSV 1743
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +1
Query: 568 PXPXXKPXLSQXPKPHPXXXXXPLXXXXGXPXXPXXPXPPXXPAXXXSPLGPPP 729
P P + P P P P G P P P P A P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Frame = +1
Query: 658 PXXPXXPXPPXXPAXXXSPLGPPPXGWARCRXXSXVRXPXPAXXXPXXPRGXAR--SPXP 831
P P PP P P PPP G A P P P G +R +P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVA------GAGPPPPPPPPPAVSAGGSRYYAPAP 797
Query: 832 XXXP 843
P
Sbjct: 798 QAEP 801
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 658 PXXPXXPXPPXXPAXXXSPLGPPPXGWARCR 750
P P P PP P PPP G+ + R
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +1
Query: 550 PXXXGVPXPXXKPXLSQXPKPHPXXXXXPLXXXXGXPXXPXXPXPPXXPAXXXSPLGPPP 729
P VP P P + + P P P+ P P P PP P P P P
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSV-PQRPAVPVV-----PEAPSVPQPPAAPVVPEVPSVPQP 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,086
Number of Sequences: 5004
Number of extensions: 15813
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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