Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N20
         (1046 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.36 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   7.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 28/107 (26%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
 Frame = +2

Query: 500 PPHAPVXXXXXRTXPXXHXXXXNXPPTXXXP--PPPXPPEXXXXPNTPKS--PXXXARXX 667
           PP A          P  +    + PP    P  PP  PP     P+ P S      A   
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS--LPPSAPPSLPMGAPAAPP 448

Query: 668 XPPXQXTAXPPPXXQXXPHPXPXTREXPPXXXXXXPXARXXXXXXLP 808
            PP    A P P       P P     PP      P A       LP
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/62 (27%), Positives = 19/62 (30%)
 Frame = +2

Query: 590 PPPPXPPEXXXXPNTPKSPXXXARXXXPPXQXTAXPPPXXQXXPHPXPXTREXPPXXXXX 769
           PPPP PP      + P  P    R   PP    + P    Q  P         PP     
Sbjct: 337 PPPPPPPRSNAAGSIPLPP--QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394

Query: 770 XP 775
            P
Sbjct: 395 IP 396



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 22/86 (25%), Positives = 24/86 (27%)
 Frame = +1

Query: 475 PXXXXXRPPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPPPXXXPXXPQYTQKPXXP 654
           P      PPPP PR   S    P    +    S   + PAPPP       P         
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVS---NPPAPPPAIPGRSAPALPPLGNAS 410

Query: 655 REXXXPXXPXHXXPXXXPXXRXXSXP 732
           R    P       P   P     S P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAP 436


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 21/82 (25%), Positives = 22/82 (26%)
 Frame = +2

Query: 575  PTXXXPPPPXPPEXXXXPNTPKSPXXXARXXXPPXQXTAXPPPXXQXXPHPXPXTREXPP 754
            P      PP P      P  PK P        PP +    P P     P P P T    P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220

Query: 755  XXXXXXPXARXXXXXXLPXXAP 820
                  P          P  AP
Sbjct: 1221 TPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/62 (24%), Positives = 16/62 (25%)
 Frame = +1

Query: 496  PPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPPPXXXPXXPQYTQKPXXPREXXXPX 675
            PP P+P         P     P         P PPP    P        P  P     P 
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218

Query: 676  XP 681
             P
Sbjct: 1219 VP 1220


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +2

Query: 575 PTXXXPPPPXPPEXXXXPNTPKSPXXXARXXXPPXQXTAXPPPXXQXXPHPXPXT 739
           P    PPPP P       NT + P           Q    PPP     P P P T
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQP-PRPPT 287



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +2

Query: 566 NXPPTXXXPPPPXPPEXXXXPNTPKSPXXXARXXXPPXQXTAXPPPXXQXXPHPXPXTRE 745
           N PP    PPPP   +     N P       R   P    T  P         P P    
Sbjct: 188 NPPPPP--PPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPT 245

Query: 746 XPP 754
            PP
Sbjct: 246 LPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 493 RPPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPPP 606
           + PPP P         P   P P         P PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 496 PPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPPPXXXP 618
           PPPP P    + A  P   P P   S   S    P P   P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 496 PPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPP 603
           PPPP      + A  P   P P         P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 572  PPTXXXPPPPXPP-EXXXXPNTPKSPXXXARXXXPPXQXTAXP 697
            PP    P PP PP      P+ P  P        PP   ++ P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 493 RPPPPRPRXXXSXAXXPXXXPTPXXXSXHXSXPAPPPPXXXPXXPQYTQKP 645
           +PPPP P+     A      P     + +    AP PP      PQ  Q+P
Sbjct: 205 QPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP--VQAYPQAPQQP 253


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 590 PPPPXPPEXXXXPNTPKSP 646
           PPPP PP     P+ P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,010
Number of Sequences: 5004
Number of extensions: 21321
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)