Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N19
(1047 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.82
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 4.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.20
Identities = 40/163 (24%), Positives = 47/163 (28%), Gaps = 1/163 (0%)
Frame = +2
Query: 548 PPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXXLPTXPXP-XPXRXX 724
PPP + + P P S PP PP + + R P P P P P R
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 725 XXXXVLRXXXXXXKNPPXQAPPRXSXXXXXXAXPCXXXPXXATXXPLXLX*XXPGSSPPX 904
L PP PP + P P P L P + P
Sbjct: 401 PALPPL-GNASRTSTPPVPTPP---------SLPPSAPPSLPPSAPPSLPMGAPAAPP-- 448
Query: 905 GDLTXPXXSPXXPXLPXRXXXYLPRXXSPLXXXXPPXXPXXAP 1033
P +P P LP P P PP P AP
Sbjct: 449 ----LPPSAPIAPPLPAGMPAAPP---LPPAAPAPPPAPAPAP 484
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.82
Identities = 24/93 (25%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Frame = +3
Query: 609 PPXXXRXXPX-TLPGXPXLX-PXXXXXHSQXPXHPXPSAXXXXXPXFARXXPXXKTPPXK 782
PP P T P P P S+ P P PSA P + P
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTP 1050
Query: 783 PXPEXPXXPPXGPPPAXXXXPXXLXXPXXSXXP 881
P P+ P PPP P S P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083
Score = 26.2 bits (55), Expect = 7.7
Identities = 28/109 (25%), Positives = 31/109 (28%), Gaps = 5/109 (4%)
Frame = +3
Query: 570 PXIXLRLXATXXXPPXXXRXXPXTLPGXPXLXPXXXXXHSQXPXHPXPS-AXXXXXPXFA 746
P I + A P P + G P P S+ P P PS A P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 747 RXXPXXKT---PPXKPXPEXPXXP-PXGPPPAXXXXPXXLXXPXXSXXP 881
P P KP P P P G PP P S P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 756 PXXKTPPXKPXPEXPXXPPXGPPP 827
P PP P P PP PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Frame = +3
Query: 756 PXXKTPPXKPXP--EXPXXPPXGPPP 827
P PP P P E P PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +2
Query: 518 PXQNPHXXGXPPPXXSYSXHXP--APXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXXLP 691
P P PPP + + P AP SLPP P S S P P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 692 TXPXP 706
P P
Sbjct: 200 KVPPP 204
Score = 26.6 bits (56), Expect = 5.8
Identities = 23/88 (26%), Positives = 27/88 (30%)
Frame = +2
Query: 770 PPXQAPPRXSXXXXXXAXPCXXXPXXATXXPLXLX*XXPGSSPPXGDLTXPXXSPXXPXL 949
PP APPR P P A+ P+ P +PP P P P
Sbjct: 139 PPTSAPPR----------PSIPPPSPASAPPI------PSKAPPIPSSLPPPAQPAAPVK 182
Query: 950 PXRXXXYLPRXXSPLXXXXPPXXPXXAP 1033
LP P+ PP AP
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 509 PXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPP 613
P RP ++P PPP S S P P SLPP
Sbjct: 412 PARPTESP-----PPPPISSSSTTPRPDDKPSLPP 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,097
Number of Sequences: 5004
Number of extensions: 14885
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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