Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N19
(1047 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.4
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 3.2
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 3.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 3.2
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 30 3.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.2
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 30 3.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.5
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 5.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 5.5
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 5.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 5.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 5.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 7.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 7.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 7.3
L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family ... 28 9.6
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = +3
Query: 633 PXTLPGXPXLXPXXXXXHSQXPXHPXPSAXXXXXPXFARXXPXXKTPPXKPXPEXPXXPP 812
P PG P P P H A P + +PP P P P PP
Sbjct: 94 PYAYPGYPV--PGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPP 151
Query: 813 XGPPP 827
PP
Sbjct: 152 PRSPP 156
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 696 PXHPXPSAXXXXXPXFARXXPXXKTPPXKPXPEXPXXPPXGPPPAXXXXPXXL 854
P P P + P P + P P PE P PP PP P L
Sbjct: 147 PRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPE-PRNPPRTPPSPIPPPPPRL 198
Score = 28.3 bits (60), Expect = 9.6
Identities = 29/104 (27%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Frame = +2
Query: 506 PPXRPX--QNPHXXGXPP-PXXSYSXHX-PAPXC---YXSLPPXXPPXXSXXSXRXPXSR 664
PP P Q+PH P P H PAP S PP PP S P
Sbjct: 82 PPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPP 141
Query: 665 PXXXXXXLPTXPXPXPXR-XXXXXXVLRXXXXXXKNPPXQAPPR 793
P P P P R R +P + PPR
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR 185
Score = 28.3 bits (60), Expect = 9.6
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Frame = +2
Query: 506 PPXRPXQNPHXXGX--PPPXXSYSXHXPAPXCYXSL-PPXXPPXXSXXSXRXPXSRPXXX 676
PP P + G PPP P P PP PP R P S
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRN 182
Query: 677 XXXLPTXPXPXP 712
P P P P
Sbjct: 183 PPRTPPSPIPPP 194
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHX-PAPXCYXSLPPXXPP 625
PP P PP Y H PAP Y PP PP
Sbjct: 97 PPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPP 137
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Frame = +3
Query: 696 PXH--PXPSAXXXXXPXFARXXPXX---KTPPXKPXPEXPXXPPXGPPP 827
P H P P+ P A P + PP P P P PP PPP
Sbjct: 103 PQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPP 151
Score = 28.7 bits (61), Expect = 7.3
Identities = 21/94 (22%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Frame = +2
Query: 530 PHXXGXPPPXXSYSXHX-------PAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXXL 688
P PPP Y PAP ++P PP S P P
Sbjct: 45 PQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQ 104
Query: 689 PTXPXPXPXRXXXXXXVLRXXXXXXKNPPXQAPP 790
P P P + + PP PP
Sbjct: 105 HAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPP 138
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/98 (24%), Positives = 25/98 (25%)
Frame = +3
Query: 552 PXXPRTPXIXLRLXATXXXPPXXXRXXPXTLPGXPXLXPXXXXXHSQXPXHPXPSAXXXX 731
P P P + L A P T G P P P P P
Sbjct: 681 PKIPLPPPTKMNLSAPSTSAGGSSALPPIT--GGPPPPPGLPPITGGPPPPPPPGGLPPI 738
Query: 732 XPXFARXXPXXKTPPXKPXPEXPXXPPXGPPPAXXXXP 845
P PP P P PP G PP P
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/98 (24%), Positives = 25/98 (25%)
Frame = +3
Query: 552 PXXPRTPXIXLRLXATXXXPPXXXRXXPXTLPGXPXLXPXXXXXHSQXPXHPXPSAXXXX 731
P P P + L A P T G P P P P P
Sbjct: 681 PKIPLPPPTKMNLSAPSTSAGGSSALPPIT--GGPPPPPGLPPITGGPPPPPPPGGLPPI 738
Query: 732 XPXFARXXPXXKTPPXKPXPEXPXXPPXGPPPAXXXXP 845
P PP P P PP G PP P
Sbjct: 739 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/98 (24%), Positives = 25/98 (25%)
Frame = +3
Query: 552 PXXPRTPXIXLRLXATXXXPPXXXRXXPXTLPGXPXLXPXXXXXHSQXPXHPXPSAXXXX 731
P P P + L A P T G P P P P P
Sbjct: 264 PKIPLPPPTKMNLSAPSTSAGGSSALPPIT--GGPPPPPGLPPITGGPPPPPPPGGLPPI 321
Query: 732 XPXFARXXPXXKTPPXKPXPEXPXXPPXGPPPAXXXXP 845
P PP P P PP G PP P
Sbjct: 322 TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGP-PPAXXXXPXXLXXPXXSXXP 881
PP KP P+ P PP P PP P P P
Sbjct: 143 PPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAP 180
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGP-PPAXXXXPXXLXXPXXSXXP 881
PP KP P+ P PP P PP P P P
Sbjct: 143 PPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAP 180
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGP-PPAXXXXPXXLXXPXXSXXP 881
PP KP P+ P PP P PP P P P
Sbjct: 143 PPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAP 180
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/62 (25%), Positives = 19/62 (30%)
Frame = +3
Query: 696 PXHPXPSAXXXXXPXFARXXPXXKTPPXKPXPEXPXXPPXGPPPAXXXXPXXLXXPXXSX 875
P P + P P +TP P PE P P P PA + P
Sbjct: 94 PAQLAPQSAPEPTPDAPAAAPVQETPQVAPAPETPAPAPETPAPAPVQETPQVVAPAPEP 153
Query: 876 XP 881
P
Sbjct: 154 TP 155
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.2
Identities = 25/98 (25%), Positives = 32/98 (32%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP P G PPP + P P S PP PP S + P +
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGS--PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
Query: 686 LPTXPXPXPXRXXXXXXVLRXXXXXXKNPPXQAPPRXS 799
T P P R + ++PP +PP S
Sbjct: 324 AGTGSPPPPPR--------QKRQAPERSPPTGSPPTGS 353
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 3.2
Identities = 25/98 (25%), Positives = 32/98 (32%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP P G PPP + P P S PP PP S + P +
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGS--PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
Query: 686 LPTXPXPXPXRXXXXXXVLRXXXXXXKNPPXQAPPRXS 799
T P P R + ++PP +PP S
Sbjct: 345 AGTGSPPPPPR--------QKRQAPERSPPTGSPPTGS 374
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 3.2
Identities = 25/98 (25%), Positives = 32/98 (32%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP P G PPP + P P S PP PP S + P +
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGS--PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Query: 686 LPTXPXPXPXRXXXXXXVLRXXXXXXKNPPXQAPPRXS 799
T P P R + ++PP +PP S
Sbjct: 330 AGTGSPPPPPR--------QKRQAPERSPPTGSPPTGS 359
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.9 bits (64), Expect = 3.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP P PA
Sbjct: 148 PPCKPCPQGPAGPPGPPGPA 167
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 145 PPCKPCPQGPPGPP-GPPGA 163
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 140 PPCKPCPQGPPGPP-GPPGA 158
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.1 bits (62), Expect = 5.5
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = -3
Query: 862 GXXSXXGXXXXAGGGPXGGXXGXSGXGLXGGV-FXXGXXRAKXGXXXXXAXGXGXWGXWE 686
G G GGG GG G G G GG+ G R G G G G
Sbjct: 63 GGGGFNGNGGFNGGGRGGGRGGNGGFGDNGGLRGGNGGGRGGNGGFDDNGGGRGGNGGGR 122
Query: 685 XXXXXXGXRXGXPGRVXGXXRXXXGG 608
G G G G GG
Sbjct: 123 GGTGGFGDNGGGRGGNGGGRGGNGGG 148
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 148 PPCKPCPDGPAGPP-GPPGA 166
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 147 PPCKPCPQGPPGPP-GPPGA 165
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 140 PPCKPCPQGPPGPP-GPPGA 158
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 5.5
Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Frame = -3
Query: 844 GXXXXAGGGPXG-GXXGXSGXGLXG--GVFXXGXXRAKXGXXXXXAXGXGXWGXWEXXXX 674
G GGGP G G G G G G G G G G G WG
Sbjct: 37 GNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGR 96
Query: 673 XXGXRXGXPGRVXGXXRXXXGG 608
G R G G GG
Sbjct: 97 GGGGRGDWGGNNNGGGGNWGGG 118
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 771 PPXKPXPEXPXXPPXGPPPA 830
PP KP P+ P PP GPP A
Sbjct: 147 PPCKPCPQGPPGPP-GPPGA 165
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 7.3
Identities = 24/95 (25%), Positives = 29/95 (30%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP P N H PPP AP + PP P + S P P
Sbjct: 490 PPPMPSINGHAPNPPPPPPLLGI---APMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGM 546
Query: 686 LPTXPXPXPXRXXXXXXVLRXXXXXXKNPPXQAPP 790
P P P +L+ K+ P PP
Sbjct: 547 ANGGPPPPP---PLPLDLLKGAVAGLKSVPGGPPP 578
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP R P G PPP P +PP PP P P
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPG---MGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Query: 686 LPTXPXPXPXR 718
P P P R
Sbjct: 360 PGMYPPPPPSR 370
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 506 PPXRPXQNPHXXGXPPPXXSYSXHXPAPXCYXSLPPXXPPXXSXXSXRXPXSRPXXXXXX 685
PP R P G PPP P +PP PP P P
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPG---MGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Query: 686 LPTXPXPXPXR 718
P P P R
Sbjct: 370 PGMYPPPPPSR 380
>L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family
protein 1, isoform c protein.
Length = 113
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -3
Query: 844 GXXXXAGGGPXGGXXGXSGXGLXGGVFXXGXXRAK 740
G GGG GG G G GG+F R K
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGGFGGGIFIFKIVRQK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,355
Number of Sequences: 27780
Number of extensions: 141385
Number of successful extensions: 998
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2782955308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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