Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N16
         (1020 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.037
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.15 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
 Frame = +2

Query: 785 PXSPXPXXXXXPPXGXNPXPXSPPPX*SXGPPXPPXXXTCP--XPSXXXXXXPXXXPXTP 958
           P  P P     PP    P P  PPP  +  PP P      P   P       P   P + 
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187

Query: 959 PN 964
           P+
Sbjct: 188 PS 189


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 21/69 (30%), Positives = 21/69 (30%)
 Frame = +2

Query: 794  PXPXXXXXPPXGXNPXPXSPPPX*SXGPPXPPXXXTCPXPSXXXXXXPXXXPXTPPNSXX 973
            P P     P     P P  PP     GPP PP     P P       P   P  P  S  
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-----PPPGVAGAGPPPPPPPPPAVSAG 788

Query: 974  XSVXXAXLP 1000
             S   A  P
Sbjct: 789  GSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 791 SPXPXXXXXPPXGXNPXPXSPPPX*SXGPPXPP 889
           +P P     P  G  P P  PP     GPP PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
 Frame = +2

Query: 785  PXSPXPXXXXXP-PXGXNPXPXSPPPX*SXGPPXPPXXXTCPXPSXXXXXXPXXXPXTPP 961
            P  P P     P P   +  P  P P  +  PP PP     P P       P   P T P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPA-AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217

Query: 962  NSXXXSVXXAXLP 1000
                 S     +P
Sbjct: 1218 PVPTPSAGLPPVP 1230



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = +2

Query: 794  PXPXXXXXPPXGXNPXPXSPP-PX*SXGPPXPPXXXTCPXPSXXXXXXPXXXPXTPPNSX 970
            P P      P    P   +PP P  S  PP P    T P P           P   P+S 
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072

Query: 971  XXSV 982
              S+
Sbjct: 1073 IPSI 1076


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
 Frame = +2

Query: 794 PXPXXXXXPPXGXNPXPXSPPPX*SXG-PPXPPXXXTCPXPSXXXXXXPXXXPXTP 958
           P P     PP      P S PP    G P  PP   + P         P   P  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 26/115 (22%), Positives = 31/115 (26%), Gaps = 4/115 (3%)
 Frame = +3

Query: 549 PXXKSHAHTTXQXPPPXXXXXXXRXPPVKXPXXXXRTXXLXXXXLXRTXXS---XXXPXX 719
           P     A +T + PPP         PP   P    R+          +  S      P  
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 720 RFXHXXPXXXSXXPRFXKLXXPPXPPPPXXXXXXXXXPIXXP-HXPXPXKAXAPP 881
                 P      P    +  P  PP P         P   P   P P  A APP
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,315
Number of Sequences: 5004
Number of extensions: 12918
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)