Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N13
         (1056 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.48 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 561 PPGSXPPXPKXPPPGXXXLPP 623
           PP S PP P  PPP     PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPP 159



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +3

Query: 564 PGSXPPXPKXPPPGXXXLPPPGXXXRXXXXXPPQXP 671
           P S PP P   PP    LPPP          PP  P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPA-QPAAPVKSPPSAP 188


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +3

Query: 561 PPGSXPPXPKXP---PPGXX-XLPPPGXXXRXXXXXPPQ 665
           PPG+ PP P  P   PP      PPPG   +     P Q
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQ 43


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +3

Query: 561  PPGSXPPXPKXP--PPGXXXLPPP 626
            PP S PP P  P  P G    PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 561  PPGSXPPXPKXPPPGXXXLPPP 626
            PP   PP PK P  G   +PPP
Sbjct: 1193 PPSEAPPVPK-PSVGVPPVPPP 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,749
Number of Sequences: 5004
Number of extensions: 15405
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)