Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N12
         (1293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999...    30   3.5  
11_06_0610 - 25449085-25453284                                         29   8.0  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    29   8.0  
07_03_1432 - 26508135-26508881,26509301-26509708                       29   8.0  

>03_03_0118 +
           14597863-14597929,14598844-14599806,14599909-14599936,
           14600288-14600666
          Length = 478

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +3

Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNP 590
           P    PP   +        P      P GG GTPP  G   P   +G P
Sbjct: 381 PVGTSPPTDFSPPAAGTTPPAGGFTPPAGGFGTPPLGGFGTPPSGFGPP 429


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 487  PSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPXSGEXXPPPXP 630
            PSH     PS         P   E  PP    E+ +P S E  PPP P
Sbjct: 926  PSHEEYVPPSPAK----STPPPEEKSPPSHTPESSSPPSEESEPPPSP 969


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
 Frame = +3

Query: 528 GGXGTPPXSGKXPP-----XXXWGNPXPXXWGTXAPP 623
           GG G PP  G  PP        +  P P  WG   PP
Sbjct: 14  GGGGAPPQWGAIPPPVPHQQQQYAPPPPQMWGQAPPP 50


>07_03_1432 - 26508135-26508881,26509301-26509708
          Length = 384

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +2

Query: 605 GNXXPPRXXTRXSPXGXSXAGXGTXKPP-KLPXTXXPXXSXGXCXWXPPAP 754
           GN  PP   T  SP   S +   T  PP   P +  P        + PP+P
Sbjct: 24  GNASPPTPITYPSPPSLSPSTPPTYPPPSSTPPSLAPVSPSPPTTYLPPSP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.142    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,283
Number of Sequences: 37544
Number of extensions: 241464
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)