Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N12
(1293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.58
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.58
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.58
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.58
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +1
Query: 421 AXAPXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPX 600
A +P P P L P P G PP PP G P
Sbjct: 234 AGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293
Query: 601 SGEXXPPPXP 630
+G PPP P
Sbjct: 294 AGSPPPPPPP 303
Score = 32.7 bits (71), Expect = 0.58
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P P P + P G PP +G PP G+P P G+ PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
Query: 624 XTXXG 638
G
Sbjct: 301 PPPRG 305
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP P P G PP +G PP P P G+ PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +1
Query: 427 APXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPXSG 606
AP G P P P S P P+ G PPR PP G P +G
Sbjct: 231 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAA---GSPPPPRTGSPPPPPT-GSPPPPPAG 286
Query: 607 EXXPPP 624
PPP
Sbjct: 287 GSPPPP 292
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 501 PXXTXXKPXGGXGTPPXS--GKXPPXXXWGNPXPXXWGTXAPPXT 629
P + P G+PP + G PP G+P P G+ PP T
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT 277
Score = 29.9 bits (64), Expect = 4.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP A P + P G+PP +G PP G+P P G+ PP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPP-TGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.58
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +1
Query: 421 AXAPXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPX 600
A +P P P L P P G PP PP G P
Sbjct: 255 AGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314
Query: 601 SGEXXPPPXP 630
+G PPP P
Sbjct: 315 AGSPPPPPPP 324
Score = 32.7 bits (71), Expect = 0.58
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P P P + P G PP +G PP G+P P G+ PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
Query: 624 XTXXG 638
G
Sbjct: 322 PPPRG 326
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP P P G PP +G PP P P G+ PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +1
Query: 427 APXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPXSG 606
AP G P P P S P P+ G PPR PP G P +G
Sbjct: 252 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAA---GSPPPPRTGSPPPPPT-GSPPPPPAG 307
Query: 607 EXXPPP 624
PPP
Sbjct: 308 GSPPPP 313
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 501 PXXTXXKPXGGXGTPPXS--GKXPPXXXWGNPXPXXWGTXAPPXT 629
P + P G+PP + G PP G+P P G+ PP T
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT 298
Score = 29.9 bits (64), Expect = 4.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP A P + P G+PP +G PP G+P P G+ PP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPP-TGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.58
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +1
Query: 421 AXAPXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPX 600
A +P P P L P P G PP PP G P
Sbjct: 240 AGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299
Query: 601 SGEXXPPPXP 630
+G PPP P
Sbjct: 300 AGSPPPPPPP 309
Score = 32.7 bits (71), Expect = 0.58
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P P P + P G PP +G PP G+P P G+ PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
Query: 624 XTXXG 638
G
Sbjct: 307 PPPRG 311
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP P P G PP +G PP P P G+ PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +1
Query: 427 APXRGXPXSXXPXLXXPXXXPSHXPXXXPSXNXXGXWGPPRXXEXXPPXXXGETXNPXSG 606
AP G P P P S P P+ G PPR PP G P +G
Sbjct: 237 APPAGSPPPPPPPKGSPPLAGSGSPPPPPAA---GSPPPPRTGSPPPPPT-GSPPPPPAG 292
Query: 607 EXXPPP 624
PPP
Sbjct: 293 GSPPPP 298
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 501 PXXTXXKPXGGXGTPPXS--GKXPPXXXWGNPXPXXWGTXAPPXT 629
P + P G+PP + G PP G+P P G+ PP T
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT 283
Score = 29.9 bits (64), Expect = 4.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +3
Query: 444 PXXXXPPXXXAXXXPXXQXPXXTXXKPXGGXGTPPXSGKXPPXXXWGNPXPXXWGTXAPP 623
P PP A P + P G+PP +G PP G+P P G+ PP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPP-TGSLPPPQAGGSPPPAGTGSPPPP 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.142 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,712
Number of Sequences: 27780
Number of extensions: 154607
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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