Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N10
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 28 1.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 2.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 27 3.7
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 27 3.7
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 4.9
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 4.9
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 6.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 8.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 8.6
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Frame = +3
Query: 45 IFFFQNGRTIKTCNTFI----VTMEPLSDF--NFETNKSTSNKDFLTRNNTNKYVKTLNC 206
I + +NGR KTCN F V +P S ++N +K NTN +++
Sbjct: 14 IIYDENGRPCKTCNIFSSFRNVAQQPNSSTVPEVKSNTQLESKQSSIDCNTNAIPDSVSF 73
Query: 207 VPNKDLFNLNSDCCVAFCGKCCRYPHRPSP 296
D+ L +P P+P
Sbjct: 74 PRLPDVAELGRSTWTFLHAMAANFPKNPTP 103
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 554 FMANVSPRFFINGSGSVCNLLNNSSPYTLFIS 459
F +NV+PR FI SVC ++ N PY+ +S
Sbjct: 394 FPSNVNPRGFICAEKSVCRVVEN--PYSNTVS 423
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 367 SREMRVRHDPQYFKQ----NCYTNGKYHTDALNDSDMKSVYGEE 486
S+E++ DPQYF + Y NG + ++LN SD + +E
Sbjct: 435 SKELKAPPDPQYFTEKTGATTYVNG--NDESLNVSDFPQIVEQE 476
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 279 PHRPSPDIRKYFNSVSCAT*KKFLENEFFEP*NARQTRSAVFQTKLLYQ 425
PH PS D+ Y NS C T +E +F A Q +++ T+L Q
Sbjct: 786 PHCPSVDL--YINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLAIQ 832
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 752 CFCSHFWNPARFVAVSLDRYLTVSTYGT*RQRDVPHHTAXNPVIP-DRVDSPPILFS*LL 576
CFC HF NP + + + G R ++P + V+ D+ PIL S L
Sbjct: 193 CFCHHFLNPPTRIPILSVMVEVIRRQGP-RLYEIPQTGFYDLVLKCAEFDTSPILLSYAL 251
Query: 575 TF 570
+F
Sbjct: 252 SF 253
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 353 FEKFLLRCTRYTIKVFSYIRRRSVRVSATL 264
+ KFL + T+ T++V+S R SVR SA +
Sbjct: 311 YRKFLKQFTQATVEVWSSTRDDSVRFSAVV 340
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 682 ETVRYLSRDTATNLAGFQK*LQKH 753
ETV+ L + T NL GF K ++KH
Sbjct: 107 ETVKKLEKYTRLNLTGFFKIVKKH 130
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 445 ALNDSDMKSVYGEELFNKLHT 507
AL+DSD++S Y EEL K T
Sbjct: 299 ALDDSDLESAYNEELEMKKDT 319
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -3
Query: 413 FCLKYCGSCLTRISRLKKFIFEKFLLRCTRYTIK 312
+C ++C + I + IFE F + C+ I+
Sbjct: 764 YCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIE 797
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 8.6
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 271 ADTLTDLRLI*ENTLIVYRVQRKRNFSKMNFLSR-EMRVRHDPQYFKQNCYTNGKYHTDA 447
AD D ++ ++ I + FS ++F S E + +D F+ + Y TDA
Sbjct: 94 ADENVDANVLKDSASIRHVSLPDAKFSMVSFSSNGEFVIAYDFVSFELSVY-----ETDA 148
Query: 448 LNDSDMKSVYGEELFNKLHTLPDPLMKNL 534
L + S+Y + + LP+P + NL
Sbjct: 149 LLKNSATSIYKAVFPDLVQVLPNPEINNL 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,780,758
Number of Sequences: 5004
Number of extensions: 83415
Number of successful extensions: 229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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