Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N10
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    27   0.24 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 18/71 (25%), Positives = 25/71 (35%)
 Frame = +3

Query: 39  DLIFFFQNGRTIKTCNTFIVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNK 218
           DLI     GR  K C  F+ T + +S+   E       +   T    N  +K  N     
Sbjct: 261 DLIATCYGGRNRKICEAFVKTGKKISELEKEMLNGQKLQGPFTAEEVNYMLKAKNMENRF 320

Query: 219 DLFNLNSDCCV 251
            LF      C+
Sbjct: 321 PLFTTVHRICI 331


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 742 LQKH-S*YHGQNTEHSH*LSDNKRMTVTLTSYSXYDYNKECKR 867
           LQ+H S   G+ + H H   D+K  T T  SY+  +YN+  +R
Sbjct: 512 LQEHDSVMLGEISPH-HEYYDSKSSTETPPSYNQLNYNENIER 553


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 689 SDIYQGTLPQTWQDSKSDYKNILNITDKTPNTVTDY 796
           S I +  L + W    + YK+ LN+  +  ++++ Y
Sbjct: 427 SKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHY 462


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 484 PHRTHSSYRYHSGHPCGI 431
           PH  HS+   HS +P  I
Sbjct: 440 PHHQHSTPLAHSSYPAAI 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,883
Number of Sequences: 438
Number of extensions: 5912
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)