Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N09
         (1016 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    47   5e-06
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    47   5e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   7.4  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 132 LKDNSKNVMRNLHITKLCLNICVGESGDRLTRAAK 236
           + + ++N M+ L I+KL LNI +GESGDRLTRAAK
Sbjct: 1   MAEKAQNPMKELRISKLVLNISLGESGDRLTRAAK 35



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 235 RMLEQLXGQXPVFSXA 282
           ++LEQL GQ PVFS A
Sbjct: 35  KVLEQLSGQTPVFSKA 50


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 132 LKDNSKNVMRNLHITKLCLNICVGESGDRLTRAAK 236
           + + ++N M+ L I+KL LNI +GESGDRLTRAAK
Sbjct: 1   MAEKAQNPMKELRISKLVLNISLGESGDRLTRAAK 35



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 235 RMLEQLXGQXPVFSXA 282
           ++LEQL GQ PVFS A
Sbjct: 35  KVLEQLSGQTPVFSKA 50


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 37/149 (24%), Positives = 45/149 (30%), Gaps = 4/149 (2%)
 Frame = +2

Query: 452 PXPPXXSPXXGXXXXPLTXGXXXPLXPPAAPSGXXPXSSPGSXRXXPXXFFXRXLGXPPT 631
           P PP  S   G    P   G   P  PP       P S+P + R  P     R +  PP 
Sbjct: 339 PPPPPRSNAAGSIPLP-PQGRSAPPPPP-------PRSAPSTGRQPPPLSSSRAVSNPPA 390

Query: 632 PPXR---XXAPSPXXXXHAXLHGXGPPXXXXGHXPXXGXRLXPV*VXXXGPDSXXA-XMP 799
           PP       AP+     +A      P        P     L P         +  A  +P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 800 PSPXXSXPRXXSXXHFXPXRXLXPGXPPA 886
           PS   + P         P     P  PPA
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 19/68 (27%), Positives = 21/68 (30%)
 Frame = +2

Query: 458  PPXXSPXXGXXXXPLTXGXXXPLXPPAAPSGXXPXSSPGSXRXXPXXFFXRXLGXPPTPP 637
            PP   P       P       P+  PAA  G  P   P      P       +G PP PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAA--GVPPVPPPSEAPPVPKP----SVGVPPVPP 1212

Query: 638  XRXXAPSP 661
                 P P
Sbjct: 1213 PSTAPPVP 1220


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 29/124 (23%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
 Frame = +2

Query: 458 PPXXSPXXGXXXXPL-TXGXXXPLXPPAAPSGXXPXSSPGSXRXXPXXFFXRXLGXPPTP 634
           PP  +P       P        P   P  PS   P + P +    P          PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 635 PXRXXAP---SPXXXXHAXLHGXGPPXXXXGHXPXXGXRLXPV*VXXXGPDSXXAXMPPS 805
           P     P   +P     +      PP    GH P              GP    A +PP 
Sbjct: 199 PKVPPPPLSQAPVANTSSRPSSFAPP---AGHAPNVTSESPK--FPNRGPSIPSASVPPV 253

Query: 806 PXXS 817
           P  S
Sbjct: 254 PPSS 257


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 132 LKDNSKNVMRNLHITKLCLNICVGESGDRLTRAAKDVGA 248
           L+++SK+V+ +L  +K+ ++IC G+S       AK  GA
Sbjct: 690 LRESSKDVISSLLRSKMEVSICSGDSLFTSVFVAKHCGA 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,028
Number of Sequences: 5004
Number of extensions: 24662
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)