Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N08
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723...    24   4.2  
04_03_0273 - 13742351-13743357,13743617-13743731                       29   5.1  
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333     28   8.8  

>07_01_0871 -
           7230228-7230338,7231055-7231348,7231972-7232148,
           7232513-7232551,7232734-7234057,7238145-7238189,
           7238456-7238498,7238680-7238716,7239035-7239325,
           7239634-7239685,7239690-7239773,7240064-7240137,
           7240703-7241641
          Length = 1169

 Score = 24.2 bits (50), Expect(2) = 4.2
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 261 DCYFRCTDVMSKIPCVS-CVFSK 196
           DCY    DV  K+PC S C+  K
Sbjct: 375 DCYGYIVDVGRKVPCSSGCICYK 397



 Score = 23.4 bits (48), Expect(2) = 4.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 360 LCSCCNCRQECYFY 319
           +C CC+   +CY Y
Sbjct: 366 ICKCCSVAGDCYGY 379


>04_03_0273 - 13742351-13743357,13743617-13743731
          Length = 373

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 161 FKLTAFSCFPMAETTPLDLLIVPLYXNRHYLFPTGITG 48
           F  T+  C P A+ T + LL +PL   R  L+ +G  G
Sbjct: 108 FATTSTGCLPSADVTLIKLLGLPLSTKRVMLYQSGCFG 145


>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
          Length = 1061

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 388 NLTCLEILQLLNKHISSLAPVEL 456
           NLT LEIL L   HIS   P EL
Sbjct: 155 NLTKLEILNLYGNHISGHIPAEL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,255,382
Number of Sequences: 37544
Number of extensions: 346094
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)