Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N07
(969 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 93 7e-20
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 93 7e-20
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 93 7e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 54 4e-08
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 4e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.009
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.56
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 3.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 92.7 bits (220), Expect = 7e-20
Identities = 44/59 (74%), Positives = 45/59 (76%)
Frame = +1
Query: 241 KFXKEAHEMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXDXI 417
KF KEA E+GKGS KYAWVLD LKAERERGITID ALWKF KY T IDAP H D I
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +2
Query: 119 MGXXKTHXNIVVIGHVDSGXSTTTGHXIYKCGG 217
MG K H N+VVIGHVDSG STTTGH IYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2
Query: 422 NMITGTSXADCAVLIVTVGXGEXEAGISXXGQXR 523
NMITGTS ADCA+LI+ G GE EAGIS GQ R
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 92.7 bits (220), Expect = 7e-20
Identities = 44/59 (74%), Positives = 45/59 (76%)
Frame = +1
Query: 241 KFXKEAHEMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXDXI 417
KF KEA E+GKGS KYAWVLD LKAERERGITID ALWKF KY T IDAP H D I
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +2
Query: 119 MGXXKTHXNIVVIGHVDSGXSTTTGHXIYKCGG 217
MG K H N+VVIGHVDSG STTTGH IYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +2
Query: 422 NMITGTSXADCAVLIVTVGXGEXEAGISXXGQXR 523
NMITGTS ADCAVLI+ G GE EAGIS GQ R
Sbjct: 101 NMITGTSQADCAVLIIGGGTGEFEAGISKDGQTR 134
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 92.7 bits (220), Expect = 7e-20
Identities = 44/59 (74%), Positives = 45/59 (76%)
Frame = +1
Query: 241 KFXKEAHEMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXDXI 417
KF KEA E+GKGS KYAWVLD LKAERERGITID ALWKF KY T IDAP H D I
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +2
Query: 119 MGXXKTHXNIVVIGHVDSGXSTTTGHXIYKCGG 217
MG K H N+VVIGHVDSG STTTGH IYKCGG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGG 33
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +2
Query: 422 NMITGTSXADCAVLIVTVGXGEXEAGISXXGQXR 523
NMITGTS ADCA+LI+ G GE EAGIS GQ R
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 53.6 bits (123), Expect = 4e-08
Identities = 27/59 (45%), Positives = 31/59 (52%)
Frame = +1
Query: 241 KFXKEAHEMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXDXI 417
K EA GKGS YAW+LD + ER RG+T+D A F K DAP H D I
Sbjct: 211 KLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFI 269
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 143 NIVVIGHVDSGXSTTTGHXIYKCG 214
++VV GHVDSG ST G +++ G
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELG 202
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 241 KFXKEAHEMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVH 405
K +EA E GK S +W LD ERE+G T++ F + +DAP H
Sbjct: 272 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGH 326
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 419 SNMITGTSXADCAVLIVTVGXGEXEAGISXXGQXR 523
+NMI G S AD VL+++ GE EAG GQ R
Sbjct: 331 TNMINGASQADIGVLVISARRGEFEAGFERGGQTR 365
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 131 KTHXNIVVIGHVDSGXSTTTGHXIYKCG 214
K H NIV IGHVD+G ST G+ ++ G
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTG 263
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 295 VLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXD 411
V+D L AER+RGITI+ A F ID P H D
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHAD 105
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 131 KTHXNIVVIGHVDSGXSTTTGHXIYKC 211
K H NI IGHVD G +T T I KC
Sbjct: 51 KPHVNIGTIGHVDHGKTTLTA-AITKC 76
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 262 EMGKGSXKYAWVLDXLKAERERGITIDXALWKFXXSKYYXTXIDAPVHXDXI 417
++G+ S +D E+ RGITI A ++ + + +D P H D I
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYI 130
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 250 KEAHEMGKGSXKYAWVLDXLKAERERGITIDXA 348
K+ HE+ +G +D ++ ERE+GITI A
Sbjct: 87 KDIHEV-RGKDNVGAKMDFMELEREKGITIQSA 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,688
Number of Sequences: 5004
Number of extensions: 25475
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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