Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N05
(1130 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.17
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.68
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 8.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 841 PPPPXXXPPKTG-PTPXXDQXPXRTXPPXPPXQXRGRXXPKKP 966
PPPP P TG P + PP PP GR P P
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 30.3 bits (65), Expect = 0.52
Identities = 45/218 (20%), Positives = 56/218 (25%), Gaps = 11/218 (5%)
Frame = +3
Query: 504 TPQTPTEXXXPXXXPGPGPPXX*LXLXXPPPPXXXP---XTTXXPPXXXPXXXXXXXXXX 674
TP + + P P PP L P PP P T PP P
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 675 XXXXXLHXXGGPANPXGXGXPXKXPXXPPXKXXXPQXPXEXXPXSPXGARXXSXXPTPPX 854
P + P P P G+ S P PP
Sbjct: 283 AINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP- 341
Query: 855 XXPXKNGADTXX*PXTXADRAXPPPXTXEGPXXPQKTXQLXXGIPXPHTXXAPDQSPXKX 1034
P N A + P A PPP P ++ L + P P +
Sbjct: 342 -PPRSNAAGSIPLPPQGRS-APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 1035 XXSLXAXPG------PXXPTDNXXXPREXPNXXP--PP 1124
+L P PT P P+ P PP
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.68
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +3
Query: 921 PPPXTXEGPXXPQKTXQLXXGIPXPHTXXAPDQSPXKXXXSLXAXPGPXXP 1073
PPP P P K + +P P AP +SP SL + P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS-APSLPSAVPPMPP 199
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 835 TRPPPPXXXPPKTGPTPXXDQXPXRTXPPXP 927
T PPPP PP P P PP P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/74 (25%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Frame = +3
Query: 417 PXAXAPPPRSXXQXXXPTPQXPXXRXQXRTPQTPTEXXXPXXXPGPGPPXX*LXLXXP-- 590
P P Q P P Q + P T P P P P L P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNV 1492
Query: 591 PPPXXXPXTTXXPP 632
P P P PP
Sbjct: 1493 PVPSMIPSVAQQPP 1506
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 256
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 282
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 295
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKPHNSXXG 984
PPP P + P P P PP P G P P + G
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXRGRXXPKKP 966
PPP P + P P P PP P G P P
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/72 (25%), Positives = 20/72 (27%)
Frame = +2
Query: 383 PTQXLXPRXXGAXRXGAXPPXXTXXXPPHPXEXXXPHXXKDPPDTHRXXXAXXPAGAGTP 562
PT+ P G G P PP P +PP H A T
Sbjct: 945 PTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTS 1003
Query: 563 PXLTXXXXPPPP 598
P PP P
Sbjct: 1004 PAAPLARVPPVP 1015
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXP----XRTXPPXPPXQXRGRXXPKKP 966
PPPP P P P P PP PP G P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 841 PPPPXXXPPKTGPTPXXDQXPXRTXPPXPPXQXR 942
PPP P K P P + PP PP R
Sbjct: 51 PPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.139 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,680
Number of Sequences: 5004
Number of extensions: 27685
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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