Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_N04
         (1134 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    33   0.42 
08_01_0059 - 394001-394708                                             31   1.3  
12_02_1174 - 26696869-26698191                                         29   5.1  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    29   5.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.1  
06_03_0743 + 24069752-24070483,24071890-24072345                       29   9.0  
04_04_1129 - 31107892-31110246                                         29   9.0  

>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 20/60 (33%), Positives = 20/60 (33%)
 Frame = +2

Query: 575 GXXXXXPGXLTLXPXXRXXYPXXPXHXPPXPPPXRPXVPGKXQXXHEQRAQXPXXPXXXP 754
           G     PG     P  R   P  P H PP PPP  P  P   Q   E     P  P   P
Sbjct: 8   GAELLSPGEAEWPPELRLP-PPPPPHPPP-PPPLEPAPPSTPQLRGEASPPPPPPPPVGP 65


>08_01_0059 - 394001-394708
          Length = 235

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/73 (26%), Positives = 21/73 (28%)
 Frame = +2

Query: 656 PPXPPPXRPXVPGKXQXXHEQRAQXPXXPXXXPXXTXXPXXXXXXRXRCPSXXXXPWVX* 835
           PP PPP R   P        +RA  P  P   P     P          P     P +  
Sbjct: 2   PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISP 61

Query: 836 XLPXXPXXEXPRH 874
             P  P    P H
Sbjct: 62  PAPVPPPPSPPPH 74


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 644 PXHXPPXPPPXRPXVPGKXQXXHEQRAQXPXXPXXXP 754
           P   PP PP   P  PG      E + Q P  P   P
Sbjct: 218 PPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAP 254


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +2

Query: 632 YPXXPXHXPPXPPPXRPXVPGKXQXXHEQRAQXPXXPXXXPXXTXXPXXXXXXRXRCPS 808
           YP  P H    PP   P  P      H   A  P  P   P  +  P          PS
Sbjct: 76  YPPPPQHHAYPPPQPHPPSPYVYDPYHAPAAAYPSYPSPNPSPSISPSSSFHHHPEPPS 134


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 656 PPXPPPXRPXVPGKXQXXHEQRAQXP 733
           PP PPP RP    + Q  HE  A  P
Sbjct: 177 PPQPPPPRPYRAERRQDAHESSAPSP 202


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +2

Query: 644 PXHXPPXPPPXRPXVPGKXQXXHEQRAQXPXXPXXXPXXTXXP 772
           P H PP PPP  P         +      P  P   P     P
Sbjct: 21  PLHFPPPPPPPPPPYAASFSGLYSSYLHPPPPPSSPPIREALP 63


>04_04_1129 - 31107892-31110246
          Length = 784

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +2

Query: 593 PGXLTLX-PXXRXXYPXXPXHXPPXPPPXRPXVP 691
           PG   L  P     YP  P H PP P P  P  P
Sbjct: 165 PGHQLLRTPLPLRRYPRPPRHPPPSPRPSTPFSP 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,563
Number of Sequences: 37544
Number of extensions: 169291
Number of successful extensions: 1237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3433095624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)