Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_N03
(1029 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 32 2.9
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 32 2.9
BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein. 31 5.2
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein. 31 5.2
U41371-1|AAA97461.1| 872|Homo sapiens spliceosome associated pr... 31 6.8
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 31 6.8
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 31 6.8
BX537771-1|CAD97834.1| 799|Homo sapiens hypothetical protein pr... 31 6.8
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
BC053577-1|AAH53577.1| 877|Homo sapiens SF3B2 protein protein. 31 6.8
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
BC000401-1|AAH00401.2| 894|Homo sapiens SF3B2 protein protein. 31 6.8
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 31 6.8
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 31 6.8
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 31 9.0
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 31 9.0
BC043258-1|AAH43258.2| 915|Homo sapiens FBXO11 protein protein. 31 9.0
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 31 9.0
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 31 9.0
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 31 9.0
AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein. 31 9.0
AB002296-1|BAA20758.2| 901|Homo sapiens KIAA0298 protein protein. 31 9.0
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 32.3 bits (70), Expect = 2.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP + PPP P +PP PPP
Sbjct: 73 PPPPPPPPQQPPPPPPPPSPGASYPPPQPPPPP 105
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 32.3 bits (70), Expect = 2.9
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP P R PP PP PPP L R PP P P
Sbjct: 942 PPRAPALPSEARAPPPPPPPPPHPPLPPPPLPPPPLPLRLPPLPPPPLP 990
>BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein.
Length = 600
Score = 31.5 bits (68), Expect = 5.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP P + PP PP P P P PP PPP
Sbjct: 93 PPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPP 141
Score = 30.7 bits (66), Expect = 9.0
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXP-PXXRXPPPLPNXXXLQXRHPPXXXXPPPS 912
PPT P PP P P PPPL PP PPP+
Sbjct: 94 PPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPA 144
>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
Length = 1217
Score = 31.5 bits (68), Expect = 5.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP P + PP PP P P P PP PPP
Sbjct: 638 PPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPP 686
Score = 30.7 bits (66), Expect = 9.0
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXP-PXXRXPPPLPNXXXLQXRHPPXXXXPPPS 912
PPT P PP P P PPPL PP PPP+
Sbjct: 639 PPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPA 689
>U41371-1|AAA97461.1| 872|Homo sapiens spliceosome associated
protein protein.
Length = 872
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP HPP PPP
Sbjct: 77 PPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPP 109
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP Q + PP PPP
Sbjct: 46 PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPP 78
>BX537771-1|CAD97834.1| 799|Homo sapiens hypothetical protein
protein.
Length = 799
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP HPP PPP
Sbjct: 102 PPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPP 134
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>BC053577-1|AAH53577.1| 877|Homo sapiens SF3B2 protein protein.
Length = 877
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP HPP PPP
Sbjct: 100 PPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPP 132
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>BC000401-1|AAH00401.2| 894|Homo sapiens SF3B2 protein protein.
Length = 894
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP HPP PPP
Sbjct: 99 PPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPP 131
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPP 906
PP PP PPP+P L PP PP
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPP 265
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 31.1 bits (67), Expect = 6.8
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 811 PPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP PP PPP Q + PP PPP
Sbjct: 46 PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPP 78
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 30.7 bits (66), Expect = 9.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 757 GGPPTXPXXXXXXRXAQXPPXXPPXXRXPP--PLPNXXXLQXRHPPXXXXPPP 909
G P P + Q PP PP + PP P P+ Q + PP PPP
Sbjct: 55 GPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP----PPP 103
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 30.7 bits (66), Expect = 9.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 757 GGPPTXPXXXXXXRXAQXPPXXPPXXRXPP--PLPNXXXLQXRHPPXXXXPPP 909
G P P + Q PP PP + PP P P+ Q + PP PPP
Sbjct: 55 GPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP----PPP 103
>BC043258-1|AAH43258.2| 915|Homo sapiens FBXO11 protein protein.
Length = 915
Score = 30.7 bits (66), Expect = 9.0
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +1
Query: 760 GPPTXPXXXXXXRXAQXPPXXPPXXRXP---PPLPNXXXLQXRHPPXXXXPPP 909
G P + Q PP PP + P PP P Q + PP PPP
Sbjct: 2 GSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPPPPPPPP 54
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 30.7 bits (66), Expect = 9.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 757 GGPPTXPXXXXXXRXAQXPPXXPPXXRXPP--PLPNXXXLQXRHPPXXXXPPP 909
G P P + Q PP PP + PP P P+ Q + PP PPP
Sbjct: 55 GPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP----PPP 103
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 30.7 bits (66), Expect = 9.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 757 GGPPTXPXXXXXXRXAQXPPXXPPXXRXPP--PLPNXXXLQXRHPPXXXXPPP 909
G P P + Q PP PP + PP P P+ Q + PP PPP
Sbjct: 55 GPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP----PPP 103
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 30.7 bits (66), Expect = 9.0
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPPS 912
PP P + PP PP PPPLPN PP PPP+
Sbjct: 330 PPPPPPPPLPPPSSAGPPPPPP----PPPLPNSPA-----PPNPGGPPPA 370
Score = 30.7 bits (66), Expect = 9.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +1
Query: 763 PPTXPXXXXXXRXAQXPPXXPPXXRXPPPLPNXXXLQXRHPPXXXXPPP 909
PP P PP PP P P PN PP PPP
Sbjct: 333 PPPPPLPPPSSAGPPPPPPPPPLPNSPAP-PNPGGPPPAPPPPGLAPPP 380
>AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.
Length = 1214
Score = 30.7 bits (66), Expect = 9.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 805 QXPPXXPPXXRXPPPLPNXXXLQXRHPP 888
Q PP PP PPPLP Q HPP
Sbjct: 454 QLPPPPPPLPHPPPPLPPPP--QQPHPP 479
>AB002296-1|BAA20758.2| 901|Homo sapiens KIAA0298 protein protein.
Length = 901
Score = 30.7 bits (66), Expect = 9.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 805 QXPPXXPPXXRXPPPLPNXXXLQXRHPP 888
Q PP PP PPPLP Q HPP
Sbjct: 489 QLPPPPPPLPHPPPPLPPPP--QQPHPP 514
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.307 0.133 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,351,904
Number of Sequences: 237096
Number of extensions: 998911
Number of successful extensions: 3384
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13876114826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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