Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M24
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    74   2e-14
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    31   0.29 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.3  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 39/80 (48%), Positives = 50/80 (62%)
 Frame = +1

Query: 163 LKLGFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 342
           +K  FNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAGRGFTL E+
Sbjct: 22  VKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFTLEEL 80

Query: 343 RAAGLNPVFARTIGIAVDPR 402
           +AAG++   A TIGI VD R
Sbjct: 81  KAAGVSRRVASTIGIPVDHR 100



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 410 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 586
           N+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVE 161

Query: 587 SVARPITEDEKNFKAYQYLRGARSIAK 667
             A+PITE+ KNF A+  L   R+ A+
Sbjct: 162 E-AKPITEEAKNFNAFSTLSNERAYAR 187



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 123 IPNGHFHKDWQRFVKTW 173
           +PN HFHKDWQR+VKTW
Sbjct: 9   LPNAHFHKDWQRYVKTW 25


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 473  ILFPKGKKVLKGEANEEER-KLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRG 649
            ILFPK  +  K +A+     K  T L+ P   V  P  ++VAR   E+EK +      R 
Sbjct: 1010 ILFPKSSQYDKDQASVSLLDKNGTLLQLPYDTVL-PYARNVARNAVEEEKTYLISDVFRE 1068

Query: 650  ARSIAKPRSVE 682
            A+   +P++++
Sbjct: 1069 AKGGGRPKAIK 1079


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 336  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 217
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 503 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 616
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,422
Number of Sequences: 5004
Number of extensions: 53600
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)