Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M22
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.41 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 529 CPGLAPSLMQAMGSPIRLLAVTSMQQRNSMADV 431
           CPG+A S    MGSP R L     +   S+  V
Sbjct: 204 CPGMALSQFDLMGSPYRNLTFVRREGEFSVLQV 236


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 601 WAAVLDVVFGMVNVYVIQQNVLI 533
           W  V  +V  +VNV V+  NVL+
Sbjct: 64  WILVTLIVLAIVNVMVVLGNVLV 86


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 495 IACISDGANPGHVINTFCWITYTFTMPNTTSKTAA 599
           +  ISD      + N + W    F  PN  +K AA
Sbjct: 12  LLAISDSQAQEKLKNIYSWKALEFAFPNGYAKLAA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,898
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)