Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M19
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    35   0.079
07_03_1136 + 24218601-24218734,24218769-24219906                       30   3.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.9  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   5.2  
01_01_0715 - 5542648-5543219,5543352-5543544                           29   6.9  
01_05_0513 - 22864657-22867899                                         28   9.1  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 35.1 bits (77), Expect = 0.079
 Identities = 23/68 (33%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
 Frame = +3

Query: 459  GEXGXRXXXPXXFFXXXXPXPGVSGGXXXXPPPPRG-GXXXXXXXXGGAPXRXXXPXGXX 635
            G  G     P   F    P P   GG    PPPPRG G         GAP     P G  
Sbjct: 1156 GLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAP-APPMPPGVP 1214

Query: 636  XXXXPPXG 659
                PP G
Sbjct: 1215 GGPPPPPG 1222


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
 Frame = -2

Query: 667 GGXPXGGXXXKXXPXGXXXRXGAPPXXXXXXXFPPR--GGGGXXXXPPETPGXG 512
           GG   GG   +    G     G PP        P R  GGGG    P   PG G
Sbjct: 149 GGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGG 202


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/64 (28%), Positives = 19/64 (29%)
 Frame = -1

Query: 599 PPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPXXX 420
           PP     P   PP  G  P  PP  P           +   P    P P KG    P   
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP----PPPPKGGASRPPAA 392

Query: 419 PXXP 408
           P  P
Sbjct: 393 PGVP 396


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/57 (28%), Positives = 17/57 (29%)
 Frame = -1

Query: 578 PXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPXXXPXXP 408
           P   PP GG  P  PP NP       +       P    P P       P   P  P
Sbjct: 9   PHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPP 65


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +3

Query: 513 PXPGVSGGXXXXPPPPRGGXXXXXXXXGGAPXRXXXPXGXXXXXXPP 653
           P P  +G     PPPP GG        GG       P        PP
Sbjct: 180 PAPAPAGSPPPPPPPPAGGNFTAPSPAGGMNFTAPAPGTNGTAAPPP 226


>01_05_0513 - 22864657-22867899
          Length = 1080

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 568 PPRGGGGXXXXPPETP 521
           PP GGGG    PPE P
Sbjct: 171 PPEGGGGDNAPPPEVP 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,328
Number of Sequences: 37544
Number of extensions: 222990
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)