Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_M19
(920 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.50
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.7
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.2
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +3
Query: 513 PXPGVSGGXXXXPPPPRGG--XXXXXXXXGGAPXRXXXPXGXXXXXXPPXGXPP 668
P G G PPPPRGG GG P R P PP G PP
Sbjct: 1561 PPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMP---PPGPPPPNGGPP 1611
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 239 GGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPS 298
Query: 425 XXPXXPGXLXNX*KNPPGXXP 363
P PG P G P
Sbjct: 299 GGP--PGPFDPSGAQPSGGPP 317
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 299 GGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS 358
Query: 425 XXPXXP 408
P P
Sbjct: 359 GGPPGP 364
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 179 GGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPS 238
Query: 425 XXPXXP 408
P P
Sbjct: 239 GGPPGP 244
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 269 GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPS 328
Query: 425 XXPXXP 408
P P
Sbjct: 329 GGPPGP 334
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 359 GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS 418
Query: 425 XXPXXP 408
P P
Sbjct: 419 GGPPGP 424
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 374 GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 433
Query: 425 XXPXXP 408
P P
Sbjct: 434 GGPPGP 439
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 389 GGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 448
Query: 425 XXPXXP 408
P P
Sbjct: 449 GGPPGP 454
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 404 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 463
Query: 425 XXPXXP 408
P P
Sbjct: 464 GGPPGP 469
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 419 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 478
Query: 425 XXPXXP 408
P P
Sbjct: 479 GGPPGP 484
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 449 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS 508
Query: 425 XXPXXP 408
P P
Sbjct: 509 GGPPGP 514
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -2
Query: 667 GGXPXGGXXXKXXPXGXXXRXGAPPXXXXXXXFPPRGGGGXXXXPPETPGXG 512
G P GG P G G PP PP GG P E P G
Sbjct: 159 GAPPSGGPPGLFDPSGAPPS-GGPPGPFGPSGAPPSGGPPGPFNPSEAPPSG 209
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 194 GGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 253
Query: 425 XXPXXP 408
P P
Sbjct: 254 GGPPGP 259
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 224 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 283
Query: 425 XXPXXP 408
P P
Sbjct: 284 GGPPGP 289
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 254 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPS 313
Query: 425 XXPXXP 408
P P
Sbjct: 314 GGPPGP 319
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 314 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 373
Query: 425 XXPXXP 408
P P
Sbjct: 374 GGPPGP 379
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 329 GGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPS 388
Query: 425 XXPXXP 408
P P
Sbjct: 389 GGPPGP 394
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 344 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPS 403
Query: 425 XXPXXP 408
P P
Sbjct: 404 GGPPGP 409
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 434 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 493
Query: 425 XXPXXP 408
P P
Sbjct: 494 GGPPGP 499
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXPX 426
GGPP P GG P P P G P PGP P
Sbjct: 464 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 523
Query: 425 XXPXXP 408
P P
Sbjct: 524 GMPPVP 529
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXG 513
GG P P PP GG P PP P G
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXG 513
GG P P PP GG P PP P G
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXG 513
GG P P PP GG P PP P G
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGA 510
GGP P GGGG P PP P+ A
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPA 650
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGA 510
GGP P GGGG P PP P+ A
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPA 650
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 513 PXPGVSGGXXXXPPPPRGGXXXXXXXXGGAPXRXXXPXGXXXXXXPPXG 659
P P +GG PPPPR G G+P P PP G
Sbjct: 280 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXP 429
G PP PP GG P PR G+ R P P P G P
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPP-----PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 513 PXPGVSGGXXXXPPPPRGGXXXXXXXXGGAPXRXXXPXGXXXXXXPPXG 659
P P +GG PPPPR G G+P P PP G
Sbjct: 301 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXP 429
G PP PP GG P PR G+ R P P P G P
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPP-----PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 513 PXPGVSGGXXXXPPPPRGGXXXXXXXXGGAPXRXXXPXGXXXXXXPPXG 659
P P +GG PPPPR G G+P P PP G
Sbjct: 286 PPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -1
Query: 605 GGPPXXXXXPXXSPPGGGGXPXXPPXNPRXGAXXXKKXXRXXXPXXXFPGPXKGXQXXP 429
G PP PP GG P PR G+ R P P P G P
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPP-----PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,794,979
Number of Sequences: 27780
Number of extensions: 158348
Number of successful extensions: 508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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