Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M16
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   326   2e-90
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.53 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.6  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  326 bits (802), Expect = 2e-90
 Identities = 152/210 (72%), Positives = 179/210 (85%), Gaps = 1/210 (0%)
 Frame = +1

Query: 208 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 387
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 388 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 564
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 565 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 744
           LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 745 TKSKFDNLYGCRESWLDGIKRAQT**LPGK 834
           TKSKFDNL+GC+ES +DGIKRA    + GK
Sbjct: 186 TKSKFDNLFGCKESLVDGIKRATDVMIAGK 215



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 801 QKGTDIMIAXKICVXAGYGDLGKDAPNVQRFGG*MIV 911
           ++ TD+MIA K+ V AG+GD+GK      R  G  ++
Sbjct: 205 KRATDVMIAGKVAVVAGFGDVGKGCSTSLRSQGARVI 241


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -1

Query: 339 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 178
           Y   +  ++W  F  T +K  H+FL  H      +F S   S F        LH +V   
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415

Query: 177 IYLXVNSLAVFF 142
           I L +    +FF
Sbjct: 416 ITLKIRGYGLFF 427


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +3

Query: 111 YFRYFNKNNLKRKQQV---NLPVGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 281
           YF   N +N++ K++    NL   +S F    E + QN   +   +  K++ + ++RN  
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233

Query: 282 PYGMSSEICSS*NTQRCQNSRQLTHD 359
              +++E   S N           HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 698 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 558
           RN+L++ CT   +     +  F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 249 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 428
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 429 H 431
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,780,511
Number of Sequences: 5004
Number of extensions: 81259
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)