Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M15
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    28   2.1  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.7  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   4.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   6.3  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 250 PLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQE 375
           P +  N+++  TE+K     P +R  +ELL S  + D L+ E
Sbjct: 330 PTEDRNVIDVKTEIKIRDFTPTLRSAIELLTSGTHADRLLSE 371


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +1

Query: 229  YPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQEPIFTE 402
            +  E+T+ L    + +  TEV+  + +PH+++  E++ S A     +QE+ Q   F E
Sbjct: 1069 FSCEETIALLSAFVFDEKTEVEPTI-SPHLQKGKEMILSVAEKVNQIQEHYQVLYFNE 1125


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 286 EVKKCLENPHVREILELLDSSANPDELV 369
           E  K +E+  V EILEL++ S NP  LV
Sbjct: 195 ENNKEIEHEVVSEILELIEKSKNPSILV 222


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -1

Query: 881 PLPP-PDXRAXGHGREPKSPXTQPPSPGVADSLCRKPPTXPLTL 753
           P PP P          P  P   PPSP  A  +  K P  P +L
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL 171


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 411 INKFCEYGFLHIFLN*LIRICRRIK 337
           INKF  +    +FL  L+R+CR++K
Sbjct: 17  INKFSSFESNWLFLLFLVRVCRQLK 41


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 244  TVPLDRLNLLENSTEVKKCL-ENPHVREILELLDSSANPDELVQ 372
            TV  ++LN+L NS    KCL + P        +D ++N ++LVQ
Sbjct: 930  TVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQ 973


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,218
Number of Sequences: 5004
Number of extensions: 59345
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)