Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M15
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.63 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.63 
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    31   1.1  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    31   1.1  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 881 PLPPPDXRAXGHGREPKSPXTQPPSPGVADSLCRKPP 771
           P PPP   + G G  P  P ++PP+P     +   PP
Sbjct: 349 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 881 PLPPPDXRAXGHGREPKSPXTQPPSPGVADSLCRKPP 771
           P PPP   + G G  P  P ++PP+P     +   PP
Sbjct: 359 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 395


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -1

Query: 875 PPPDXRAXGHGREPKSPXTQPPSPGVADSLCRKP-PTXP 762
           PPP  R   HG  P  P   PPS G       +P P  P
Sbjct: 558 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAP 596


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -1

Query: 875 PPPDXRAXGHGREPKSPXTQPPSPGVADSLCRKP-PTXP 762
           PPP  R   HG  P  P   PPS G       +P P  P
Sbjct: 384 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAP 422


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -1

Query: 881 PLPPPDXRAXGHGREPKSPXTQPPSPGVADSLCRKPPTXPL 759
           P PPP     GH   P  P   PP  G+A      PP  P+
Sbjct: 488 PPPPPMPSINGHAPNPPPP---PPLLGIAPMSTNAPPPPPM 525


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
 Frame = -1

Query: 884 KPLPPPDXRAXGHGREP------KSPXTQPPSPGVADSLCRKPPTXP 762
           KP PPP  R       P      KSP   PP P +A      PP  P
Sbjct: 464 KPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPP 510


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
 Frame = -1

Query: 884 KPLPPPDXRAXGHGREP------KSPXTQPPSPGVADSLCRKPPTXP 762
           KP PPP  R       P      KSP   PP P +A      PP  P
Sbjct: 471 KPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPP 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,808
Number of Sequences: 27780
Number of extensions: 344059
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)