Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M12
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   9.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +3

Query: 648 GXXXPPPPPPXGEKXXPPPPPPXFFFXXXXPXXXKKKKKK 767
           G   PPPPPP  E    PPPPP        P   KK+K K
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP-------PPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 645 GGXXXPPPPPPXGEKXXPPPPPP 713
           GG   PPPPP       PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 33.9 bits (74), Expect = 0.026
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +3

Query: 648 GXXXPPPPPPX--GEKXXPPPPPP 713
           G   PPPPPP   G    PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
 Frame = +3

Query: 660 PPPPPPXGEKXX----PPPPPP 713
           PPPPPP G        PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 663 PPPPPXGEKXXPPPPPP 713
           P PPP      PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 660 PPPPPPXGEKXXPPPPP 710
           PPP P  G    PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 663 PPPPPXGEKXXPPPPPP 713
           PPP P      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 645 GGXXXPPPPPP 677
           GG   PPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 21.4 bits (43), Expect(2) = 1.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 660 PPPPPPXGE 686
           PPPPPP  +
Sbjct: 309 PPPPPPSND 317


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 666 PPPPXGEKXXPPPPP 710
           P PP G    PPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 648 GXXXPPPPPPXGEKXXPPPPPP 713
           G   PPPPPP         PPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +3

Query: 660  PP--PPPPXGEKXXPPPPPP 713
            PP  PP P G    PPPP P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLP 1736


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 660 PPPPPPXGEKXXPPPPP 710
           P P P    K  PPPPP
Sbjct: 732 PTPAPTPAVKHHPPPPP 748


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 660 PPPPPPXGEKXXPPPPPP 713
           PPPPPP        P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,005
Number of Sequences: 5004
Number of extensions: 23545
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)