Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M11
         (954 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0707 - 5453933-5454619                                           29   7.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.5  
06_01_0938 - 7229953-7230882                                           28   9.5  

>01_01_0707 - 5453933-5454619
          Length = 228

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 720 PXAPPPDEHHKIDAQSECETDR 785
           P APPPDEHH      + E+ R
Sbjct: 145 PAAPPPDEHHPRHEPQQPESSR 166


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 489 NESAN---ARGEAVCVLGALPLPRSLTRCAR 572
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_0938 - 7229953-7230882
          Length = 309

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 32/122 (26%), Positives = 48/122 (39%)
 Frame = -1

Query: 531 PIRKPPLPARWPIH*CRKNLPHLPLNLKHKMNAIVVVNLFIAAYNGYK*SNSITNFTNKA 352
           P+R   LPA    H  R+     PL+L+H +  IV     ++A    +   S+      A
Sbjct: 24  PLRPLLLPAAAASHLPRRLGLATPLHLRHLLAGIVSALFLLSALFSARHHLSLPTLAATA 83

Query: 351 FFSLHSSCGLSKLINVSYHVWIQLTLXKGRSAAAVLXXXXXXXFLRPGILQGIETK*FNN 172
            F L++   L+ L        + L L     AAA           RP    GIE + F+ 
Sbjct: 84  LFLLYALAPLAPL-----RAPLPLPLLDLVLAAAFAQELLLFAHRRPSTAAGIENRYFDL 138

Query: 171 YL 166
           +L
Sbjct: 139 FL 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,489
Number of Sequences: 37544
Number of extensions: 354705
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)