Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_M09
(911 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;... 126 8e-28
UniRef50_UPI00015B411C Cluster: PREDICTED: similar to pseudourid... 124 2e-27
UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA ... 119 1e-25
UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;... 114 3e-24
UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole... 90 8e-17
UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1; Yar... 85 3e-15
UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1; Dic... 82 2e-14
UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole geno... 81 3e-14
UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 80 7e-14
UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis thal... 80 9e-14
UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29; Eu... 78 4e-13
UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4; ... 77 5e-13
UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1; ... 77 5e-13
UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2; Ost... 77 6e-13
UniRef50_Q7S319 Cluster: Putative uncharacterized protein NCU075... 77 6e-13
UniRef50_Q9XXN0 Cluster: Putative uncharacterized protein pus-1;... 75 2e-12
UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1; Sch... 74 4e-12
UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7; Sac... 73 8e-12
UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1; ... 73 1e-11
UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1; ... 73 1e-11
UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1... 72 2e-11
UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_Q3KZ66 Cluster: Pseudouridylate synthase; n=3; Schistos... 68 4e-10
UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces cere... 66 9e-10
UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2; ... 66 9e-10
UniRef50_P53167 Cluster: tRNA pseudouridine synthase 2; n=2; Sac... 66 2e-09
UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus n... 64 4e-09
UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1; Methanob... 61 3e-08
UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_A3F4X8 Cluster: TRNA pseudouridine synthase A; n=1; Tae... 58 4e-07
UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1; ... 58 4e-07
UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n... 58 4e-07
UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1; Sch... 58 4e-07
UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2... 57 7e-07
UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genom... 56 2e-06
UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1; Met... 56 2e-06
UniRef50_Q8SS41 Cluster: Pseudouridylate synthase; n=1; Encephal... 54 4e-06
UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1; Methanos... 53 9e-06
UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3; ... 53 1e-05
UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family prot... 52 2e-05
UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_A2SU30 Cluster: Pseudouridylate synthase; n=1; Methanoc... 52 3e-05
UniRef50_A4S8M4 Cluster: Predicted protein; n=2; Ostreococcus|Re... 51 5e-05
UniRef50_Q1XD12 Cluster: TRNA pseudouridine synthase; n=1; Pneum... 51 5e-05
UniRef50_O74451 Cluster: Pseudouridylate synthase; n=1; Schizosa... 51 5e-05
UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3; ... 49 1e-04
UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1; Halor... 48 4e-04
UniRef50_Q59S63 Cluster: tRNA pseudouridine synthase 1; n=2; Sac... 47 8e-04
UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;... 46 0.001
UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tR... 46 0.001
UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4; The... 46 0.001
UniRef50_A7PC02 Cluster: Chromosome chr2 scaffold_11, whole geno... 46 0.002
UniRef50_Q54TQ3 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_Q54LM5 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n... 45 0.002
UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3; Hal... 45 0.002
UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5; Arc... 44 0.004
UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1; Methanos... 44 0.005
UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1; Haloquad... 44 0.005
UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lambl... 44 0.007
UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Parameci... 44 0.007
UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein; ... 42 0.017
UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family prot... 42 0.017
UniRef50_Q6MDE3 Cluster: tRNA pseudouridine synthase A 2; n=1; C... 42 0.017
UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3; Fus... 42 0.022
UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultur... 42 0.029
UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3; Bor... 42 0.029
UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1; Can... 41 0.038
UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahym... 41 0.050
UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1; Schizosa... 41 0.050
UniRef50_Q654A2 Cluster: Pseudouridylate synthase; n=3; Oryza sa... 40 0.067
UniRef50_Q8KDR7 Cluster: tRNA pseudouridine synthase A; n=9; Chl... 40 0.067
UniRef50_Q8GUL5 Cluster: Putative uncharacterized protein At5g35... 40 0.12
UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11; Fr... 40 0.12
UniRef50_Q22RZ3 Cluster: TRNA pseudouridine synthase family prot... 39 0.15
UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Parameci... 39 0.15
UniRef50_A3CXX4 Cluster: Pseudouridylate synthase; n=1; Methanoc... 39 0.15
UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1; Methanos... 39 0.15
UniRef50_Q6F1W2 Cluster: tRNA pseudouridine synthase A; n=3; Mol... 39 0.15
UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10; La... 39 0.15
UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:... 39 0.20
UniRef50_Q8IAP2 Cluster: Putative uncharacterized protein PF08_0... 39 0.20
UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42; La... 39 0.20
UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1; Caminiba... 38 0.27
UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2; Desulfit... 38 0.36
UniRef50_A0LIV1 Cluster: Pseudouridylate synthase; n=1; Syntroph... 38 0.47
UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep... 37 0.62
UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2; Culicida... 37 0.82
UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4; Saccharo... 37 0.82
UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultur... 37 0.82
UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5; Sac... 37 0.82
UniRef50_Q5CPW7 Cluster: Pus1p-like type II pseudousynthas TruA;... 36 1.1
UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4; Saccharo... 36 1.1
UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1; Arc... 36 1.1
UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3; Tetraodo... 36 1.4
UniRef50_Q08Z59 Cluster: Pseudouridylate synthase; n=2; Cystobac... 36 1.4
UniRef50_Q0UN59 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea lo... 36 1.9
UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella ve... 33 2.3
UniRef50_UPI00015653AF Cluster: tRNA-pseudouridine synthase A; n... 35 2.5
UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2; Ana... 35 2.5
UniRef50_Q7RDA0 Cluster: Putative uncharacterized protein PY0552... 35 2.5
UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2; Acidobac... 35 3.3
UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4; Clostrid... 35 3.3
UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19; Eu... 35 3.3
UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to pseudourid... 34 4.4
UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1; ... 34 4.4
UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1; Carboxyd... 34 4.4
UniRef50_Q7TU07 Cluster: tRNA pseudouridine synthase A; n=1; Pir... 34 4.4
UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11; Ba... 34 4.4
UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32, pa... 34 5.8
UniRef50_A5N902 Cluster: Predicted transporter protein; n=1; Clo... 34 5.8
UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, who... 34 5.8
UniRef50_Q6C194 Cluster: Pseudouridylate synthase; n=1; Yarrowia... 34 5.8
UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase ta... 34 5.8
UniRef50_Q57WP9 Cluster: Pseudouridylate synthase I, putative; n... 33 7.7
>UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4159-PA - Tribolium castaneum
Length = 588
Score = 126 bits (304), Expect = 8e-28
Identities = 62/120 (51%), Positives = 82/120 (68%)
Frame = +1
Query: 376 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 555
ET+ GE+ E+IKR+K A+LLGYSG YYGMQRNP TI YI++E
Sbjct: 241 ETEVTGEL---IEKIKRRKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEE 297
Query: 556 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
+F Q QFQR++RTDKGVSAA QVVSLKL ++++ +IN++LPE I+VF ++RV F
Sbjct: 298 NFTQVQTMQFQRAARTDKGVSAARQVVSLKLREDIDISKINEQLPEVIRVFGIRRVTKGF 357
Score = 37.1 bits (82), Expect = 0.62
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTYVFEP--SLVXMKRERLXDT 839
TK +SK +C++RSY+Y LPT F P L+ K RL D+
Sbjct: 354 TKGFNSKVQCDSRSYTYLLPTVSFTPHDQLMVQKGFRLDDS 394
>UniRef50_UPI00015B411C Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 437
Score = 124 bits (300), Expect = 2e-27
Identities = 62/111 (55%), Positives = 73/111 (65%)
Frame = +1
Query: 403 KPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
+P+ RIKRK AM+LGY G YYGMQRNPG TI IT E FE QN
Sbjct: 64 QPFIRIKRKNYAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNIN 123
Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
FQR++RTDKGVSA QVVSLKLP + + + IN+ LPE I+VFA+KRV F
Sbjct: 124 FQRAARTDKGVSAVRQVVSLKLPEDPSKDSINETLPEDIRVFAIKRVTKGF 174
Score = 40.7 bits (91), Expect = 0.050
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTYVFEPSLVXMKRE 824
TK +SKS+C+AR+YSYT+PT+ P + + +E
Sbjct: 171 TKGFNSKSQCDARTYSYTMPTFALAPENLELFQE 204
>UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA -
Drosophila melanogaster (Fruit fly)
Length = 410
Score = 119 bits (286), Expect = 1e-25
Identities = 58/110 (52%), Positives = 75/110 (68%)
Frame = +1
Query: 406 PYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQF 585
P +RIKRKK A+LL Y G YYGMQRNPG+QTI +IT++ FE Q + F
Sbjct: 63 PADRIKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 586 QRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
QR++RTDKGVSAA QV S+KLP E+++E N LP+ I++F V+RV F
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGF 172
Score = 39.5 bits (88), Expect = 0.12
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTYVFEP 800
TK ++K +CNAR+Y+YTLPT F P
Sbjct: 169 TKGFNAKDQCNARTYTYTLPTVAFAP 194
>UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG4159-PA
- Apis mellifera
Length = 366
Score = 114 bits (274), Expect = 3e-24
Identities = 62/146 (42%), Positives = 84/146 (57%)
Frame = +1
Query: 298 EENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGM 477
E NK I+ V + R + P +I + IK+KK M+LGY G Y GM
Sbjct: 4 ETNKQIEDVVEETNKRQIIDESSEIVAKAPKLDIIEKKNNIKKKKFVMVLGYLGKNYSGM 63
Query: 478 QRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLE 657
Q N G++TI +IT+ +FE+ + +FQR++RTDKGVSA Q+VSL+LP
Sbjct: 64 QINRGIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKGVSAVRQIVSLQLPNH 123
Query: 658 VNVEEINKRLPETIKVFAVKRVPNRF 735
VN E+INK LP+ IKVF +KRV F
Sbjct: 124 VNKEDINKHLPKDIKVFDIKRVTRNF 149
Score = 34.3 bits (75), Expect = 4.4
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTY 788
T+ +SK+KC+AR+Y Y LPT+
Sbjct: 146 TRNFNSKNKCDARTYRYVLPTF 167
>UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8839,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 375
Score = 89.8 bits (213), Expect = 8e-17
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQF 585
R +KK+A+LL YSG YYGMQRNPG +TI I + E+ + F
Sbjct: 71 RYPKKKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSF 130
Query: 586 QRSSRTDKGVSAAEQVVSLKLPL-EVNVEEINKRLPETIKVFAVKRVPNRF 735
QR +RTDKGVSAA QVVSLKL L + E+IN+ LP I+V VKRV F
Sbjct: 131 QRCARTDKGVSAAGQVVSLKLWLIDDLAEKINQHLPPQIRVLGVKRVTQGF 181
Score = 34.7 bits (76), Expect = 3.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTYVFEP 800
T+ +SK+ C+AR+Y+Y LPT F P
Sbjct: 178 TQGFNSKNNCDARTYAYMLPTVAFAP 203
>UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1;
Yarrowia lipolytica|Rep: tRNA pseudouridine synthase 1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 528
Score = 84.6 bits (200), Expect = 3e-15
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Frame = +1
Query: 352 KRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXX 531
K+ RD K G + R ++K+A ++GY G Y+GMQ NP +TI
Sbjct: 60 KQGEGRDTRRKTDGPLVADEVRQPKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFV 119
Query: 532 XXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKV 705
I+Q + ++ + + F R++RTDKGV AA V+SLK+ +E VE+IN LPE ++V
Sbjct: 120 KAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRV 179
Query: 706 FAVKRVPNRF 735
+ V R F
Sbjct: 180 WGVSRTNKAF 189
>UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: TRNA pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 596
Score = 81.8 bits (193), Expect = 2e-14
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Frame = +1
Query: 274 EAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPP-----------GEIKKPYERI 420
EA + D+ K + T NKR+ ++ +PP + K +
Sbjct: 78 EADEDELDKFEKESESTSTTTTTTENKRKPNQPPPVRPPKLSKEELIELQNKTKITTDES 137
Query: 421 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 600
++KK+A++LGYSG Y GMQ+NPG++T+ I+ ++ Q + R +R
Sbjct: 138 RKKKVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCAR 197
Query: 601 TDKGVSAAEQVVSLKLPL-----EVNVEEINKRLPETIKVFAVKRVPNRF 735
TDKGVSA VVSLK+ + E +NK LP+ I VF + RV N F
Sbjct: 198 TDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSF 247
Score = 35.1 bits (77), Expect = 2.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 735 HSKSKCNARSYSYTLPTYVFEPSLVXMKRERLXDTAEKXKVNS 863
H+K+ +ARSY Y PT+VFEP + + + A + N+
Sbjct: 248 HAKNAVDARSYIYVTPTHVFEPKFSKKNKSIVEEAANGGENNT 290
>UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 378
Score = 81.4 bits (192), Expect = 3e-14
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Frame = +1
Query: 400 KKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 579
KKP R KR+K+A+ Y GV Y GMQ+NPG +TI + ++D + +
Sbjct: 32 KKP--RYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRF 89
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+ RS+RTDKGVSA QVVS + ++ VE +N LP I++F KRV F
Sbjct: 90 DWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASF 143
>UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 300
Score = 80.2 bits (189), Expect = 7e-14
Identities = 46/105 (43%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
+KK A+L+ Y GV Y GMQ NPGV+TI IT + E FQR +RT
Sbjct: 1 KKKCALLISYCGVGYAGMQINPGVRTIEEQLINALHQAEVITDDAKECLGKMSFQRCART 60
Query: 604 DKGVSAAEQVVSLKL-PLEVNVEEINKRLPETIKVFAVKRVPNRF 735
DKGVSAA QVVSLK+ L + +IN LP I++F + + F
Sbjct: 61 DKGVSAARQVVSLKISALSSLLPKINSFLPPEIRIFGMIKTTKAF 105
>UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis
thaliana|Rep: F14O10.3 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 549
Score = 79.8 bits (188), Expect = 9e-14
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 594
+ +R+K+A++ + GV Y GMQ+NPG +TI + D +N ++ RS
Sbjct: 54 KYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARS 113
Query: 595 SRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGVSA QVVS + ++ VE +N +LP+ I+VF KRV F
Sbjct: 114 ARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSF 162
>UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29;
Euteleostomi|Rep: tRNA pseudouridine synthase A - Homo
sapiens (Human)
Length = 427
Score = 77.8 bits (183), Expect = 4e-13
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
E+ ++K+ +L+ YSG Y+GMQRN G +TI I + E+ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNV-EEINKRLPETIKVFAVKRVPNRF 735
FQR +RTDKGVSAA QVVSLK+ L ++ E+IN LP I++ +KRV F
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGF 190
>UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 588
Score = 77.4 bits (182), Expect = 5e-13
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 594
R KR+K+A+LLGY G Y GMQ+NPG +TI + + D + + R+
Sbjct: 45 RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104
Query: 595 SRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGVSAA QVVS + ++ V + +N +L I+ F RV N F
Sbjct: 105 ARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSF 153
>UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 615
Score = 77.4 bits (182), Expect = 5e-13
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Frame = +1
Query: 343 RYNKRRAHRDWETKPPG--EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXX 516
R ++R R + + P E +R+ ++K+A+ GY G+ Y G+Q NPGV+TI
Sbjct: 91 RRDRRGTGRAQDNESPSTCEASASTDRLPKRKVAVKFGYCGIGYSGLQINPGVKTIEGDI 150
Query: 517 XXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKL--------PLEVNVEE 672
++ ++ N QR++RTD+GV AA ++SLKL P E V++
Sbjct: 151 FDAFCTAGAVSSDNAVNPNKVGLQRAARTDRGVHAAGNLLSLKLILQPQGLKPGETLVDK 210
Query: 673 INKRLPETIKVFAVKRVPNRF 735
+N+ LP I+++ V RV N F
Sbjct: 211 VNELLPPFIRIWGVTRVQNGF 231
>UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2;
Ostreococcus|Rep: TRNA pseudouridylate synthase -
Ostreococcus tauri
Length = 450
Score = 77.0 bits (181), Expect = 6e-13
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Frame = +1
Query: 421 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 600
K++K A+ Y G Y GMQRNPGV+TI I+ + + Q+ R++R
Sbjct: 40 KKRKCALTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 99
Query: 601 TDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRV 723
TDKGVSA QV++LK+ +E + + IN+ LPE +VF + RV
Sbjct: 100 TDKGVSAVGQVIALKMVMEPDGMLARINEALPERFEVFGIDRV 142
>UniRef50_Q7S319 Cluster: Putative uncharacterized protein
NCU07528.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU07528.1 - Neurospora crassa
Length = 625
Score = 77.0 bits (181), Expect = 6e-13
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
ER ++K+A+L+GY+G Y+G+Q N +TI I++ + ++ + + R
Sbjct: 116 ERRPKRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVR 175
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGV AA V+SLKL +E V++IN LP+ IKV+ ++RV N F
Sbjct: 176 CARTDKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGF 225
>UniRef50_Q9XXN0 Cluster: Putative uncharacterized protein pus-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein pus-1 - Caenorhabditis elegans
Length = 415
Score = 75.4 bits (177), Expect = 2e-12
Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Frame = +1
Query: 394 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 573
E KKP R+K+ K AMLLGY G +YYGMQ + TI +IT E
Sbjct: 24 EPKKP--RVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPF 81
Query: 574 NAQFQRSSRTDKGVSAAEQVVSLKLPLE------VNVEEINKRLPETIKVFAVKRVPNRF 735
+ FQR++RTD+ VSAA Q+ ++LP + +N LP I+VF ++R N F
Sbjct: 82 DFFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFF 141
Query: 736 IP 741
P
Sbjct: 142 HP 143
>UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 1 - Schizosaccharomyces pombe (Fission yeast)
Length = 534
Score = 74.1 bits (174), Expect = 4e-12
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
E+ ++K+A L+GY G Y+GMQ NP +TI ++ + ++ + R
Sbjct: 39 EKKPKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALAR 98
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRFIP 741
++RTDKGV AA V+SLKL +E +E++N+ LP +I+++ V R N F P
Sbjct: 99 AARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNP 150
>UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7;
Saccharomycetales|Rep: tRNA pseudouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 544
Score = 73.3 bits (172), Expect = 8e-12
Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 594
R+ ++K+A+++GY G Y+GMQ NP TI I++++ + + F R+
Sbjct: 71 RLPKRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 595 SRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGV A ++SLK+ +E ++IN++LPE I+V+ ++RV F
Sbjct: 131 ARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAF 179
>UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 584
Score = 72.9 bits (171), Expect = 1e-11
Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
ER ++K+A+L+GY+G Y+G+Q N +TI I++ + ++ + + R
Sbjct: 103 ERRPKRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVR 162
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGV AA V+SLKL +E V +IN+ LPE I+++ + R N F
Sbjct: 163 CARTDKGVHAAGNVLSLKLIVEDEDIVTKINEHLPEQIRIWGIHRTSNGF 212
>UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 621
Score = 72.9 bits (171), Expect = 1e-11
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 388 PGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFEN 567
P E + ER ++K+A+++GYSG Y GMQ + +TI I++ + ++
Sbjct: 92 PAEEVEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTAFVAAGAISKANADD 151
Query: 568 AQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRF 735
+ + R +RTDKGV AA V+SLKL +E VE+IN L E I+V+ ++R F
Sbjct: 152 PKKSSLVRCARTDKGVHAAGNVISLKLIIEEEDIVEKINSHLSEQIRVWGIQRTTGSF 209
>UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: tRNA pseudouridine
synthase - Entamoeba histolytica HM-1:IMSS
Length = 401
Score = 71.7 bits (168), Expect = 2e-11
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 385 PPGEIKKPYERIKRKKMAMLLGYSGVEYYG-MQRNPGVQTIXXXXXXXXXXXXYITQEDF 561
P E KK ERIK+ K+A++ Y G Y+G M N +TI I++++
Sbjct: 29 PKEEEKK--ERIKKFKVAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNK 86
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN-VEEINKRLPETIKVFAVKRVPNRF 735
+ + + R +RTDKGVSAA ++SLK+ L+ N +E IN LPETI++ V +V + F
Sbjct: 87 HDLKKVGWSRCARTDKGVSAANNLISLKMGLDGNYIERINSFLPETIRIQDVVKVSHSF 145
>UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 562
Score = 70.9 bits (166), Expect = 4e-11
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
+R+ ++K+A+++GY G Y+GMQ NP TI I++ + + + F R
Sbjct: 72 KRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIEDALFKAFVQAGAISKANSNDLKKNGFMR 131
Query: 592 SSRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRF 735
++RTDKGV A ++SLK+ +E ++IN+ LP IKV+ ++RV F
Sbjct: 132 AARTDKGVHAGGNLISLKMIIEDPEIKQKINEELPNGIKVWNIERVNKAF 181
>UniRef50_Q3KZ66 Cluster: Pseudouridylate synthase; n=3; Schistosoma
japonicum|Rep: Pseudouridylate synthase - Schistosoma
japonicum (Blood fluke)
Length = 334
Score = 67.7 bits (158), Expect = 4e-10
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +1
Query: 421 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 600
KR+ A+L+ YSG YYGMQR P TI + E + FQR+S+
Sbjct: 45 KRRNNAILMMYSGWGYYGMQRGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASK 104
Query: 601 TDKGVSAAEQVVSLKLPLEVN-VEEINKRLPETIKVFAVKRVPNRF 735
TDK VSA QV SLKL + + + ++N LP+ I++ + RV F
Sbjct: 105 TDKYVSALGQVCSLKLYDDADLLNKLNTALPQDIRILDIIRVTRSF 150
>UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2; n=1;
Candida glabrata|Rep: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2 -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 317
Score = 66.5 bits (155), Expect = 9e-10
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +1
Query: 433 MAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKG 612
MA++LGY G Y G+Q NP TI I+Q + ++ + F R++RTDKG
Sbjct: 1 MALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKG 60
Query: 613 VSAAEQVVSLKL-----PLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATL 777
V A +V+LK+ P +V E+N+ LP+ I+++ V V +F + A H +
Sbjct: 61 VHALTNLVALKMQRYEVPQQVKA-ELNEILPDDIRIWDVVPVKKKFNARVMAGTRHYRYV 119
Query: 778 FPRMCL 795
P L
Sbjct: 120 IPTFLL 125
>UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 631
Score = 66.5 bits (155), Expect = 9e-10
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = +1
Query: 394 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 573
E++KP + K+A+++GY+G Y G+Q N +TI I++ + + +
Sbjct: 92 EVRKP-----KHKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPK 146
Query: 574 NAQFQRSSRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRF 735
+ R +RTDKGV AA V+SLKL +E VE IN LP+ I+V+ ++R F
Sbjct: 147 KSALIRCARTDKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSF 202
>UniRef50_P53167 Cluster: tRNA pseudouridine synthase 2; n=2;
Saccharomyces cerevisiae|Rep: tRNA pseudouridine
synthase 2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 370
Score = 65.7 bits (153), Expect = 2e-09
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 439 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 618
MLLGY G YYGMQ NP +TI I++E+ + F ++RTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 619 AAEQVVSLKLPL-EVNVEEINKRLPETIKVFAVKRVPNRF 735
A ++SLK+ L E V ++N LP I+V+ ++ V +F
Sbjct: 61 AMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKF 100
>UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus
niger|Rep: Putative frameshift - Aspergillus niger
Length = 567
Score = 64.5 bits (150), Expect = 4e-09
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
+R +KK+A+LLGYSG Y GMQ + +TI I++ + + + + R
Sbjct: 114 QRRPKKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVR 173
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAV 714
+RTDKGV AA +VSLKL +E + +++IN++L I+V+ +
Sbjct: 174 CARTDKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDI 216
>UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1;
Methanobrevibacter smithii ATCC 35061|Rep:
Pseudouridylate synthase - Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861)
Length = 290
Score = 61.3 bits (142), Expect = 3e-08
Identities = 36/118 (30%), Positives = 58/118 (49%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
K+ A+ +GY G ++G QR P ++T+ YI ++ + ++F+ + RTD
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYI-----DDLKKSRFRIAGRTD 56
Query: 607 KGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLF 780
GV + V+S + EV V EIN LP+ I++ A V F P M + LF
Sbjct: 57 AGVHSLGNVISFQSEKEVRVNEINNSLPDDIQILAKAPVRFGFKPRYAEMRQYRYVLF 114
>UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 720
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/88 (36%), Positives = 49/88 (55%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
ER +KK+A+L+GY+G Y GMQ N +TI I++ + + + R
Sbjct: 107 ERKPKKKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMR 166
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVNVEEI 675
+RTDKGV AA V+SLKL + + +E+
Sbjct: 167 CARTDKGVHAASNVISLKLIVPLEEKEL 194
>UniRef50_A3F4X8 Cluster: TRNA pseudouridine synthase A; n=1; Taenia
asiatica|Rep: TRNA pseudouridine synthase A - Taenia
asiatica (Asian tapeworm)
Length = 123
Score = 57.6 bits (133), Expect = 4e-07
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+K A+L+ YSGV + GMQRN G +TI YI +E +N FQR+S+TD
Sbjct: 57 RKCAILVVYSGVGFCGMQRNEGFRTIEGELMMALCNAGYILEEHMKNPSMICFQRASKTD 116
Query: 607 KGVSAA 624
K VSAA
Sbjct: 117 KNVSAA 122
>UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 634
Score = 57.6 bits (133), Expect = 4e-07
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
+R +KK+A++LGYSG Y GMQ + +TI I++ + + + + R
Sbjct: 116 QRRPKKKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVR 175
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIK 702
+RTDKGV AA VVSLKL +E V++IN L I+
Sbjct: 176 CARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIR 214
>UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n=1;
Arabidopsis thaliana|Rep: Putative tRNA pseudouridine
synthase - Arabidopsis thaliana (Mouse-ear cress)
Length = 510
Score = 57.6 bits (133), Expect = 4e-07
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQ---RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 579
+E ++KK+ + +GY G +Y G+Q +P ++TI I ++ +
Sbjct: 57 WESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKI 116
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPL-----------EVNVEEINKRLPETIKVFAVKRVP 726
+ RSSRTDKGV + +SLK+ + V + I+K LPE I+VF+V
Sbjct: 117 GWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSN 176
Query: 727 NRFIPNLNAMLVHIATLFP 783
RF P L + L P
Sbjct: 177 RRFDPRRECTLRKYSYLLP 195
>UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 2 - Schizosaccharomyces pombe (Fission yeast)
Length = 451
Score = 57.6 bits (133), Expect = 4e-07
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++ +LLGYSG Y+G+Q N ++TI Y+ + + A++ R++RTDK
Sbjct: 40 RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNID-AEHLCIARAARTDK 98
Query: 610 GVSAAEQVVSLKL----PLEVNV--EEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIA 771
GV ++SL L PL++++ E+N+ L I+V++V P F P ++
Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYE 158
Query: 772 TLFPRMCL 795
L P L
Sbjct: 159 YLIPSFAL 166
>UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2;
Filobasidiella neoformans|Rep: Pseudouridylate synthase,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 560
Score = 56.8 bits (131), Expect = 7e-07
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +1
Query: 358 RAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQ-RNPGVQTIXXXXXXXXXX 534
RA R WE P E +R+ +++ A+L+GY G Y GMQ ++ +TI
Sbjct: 103 RAQRAWE---PSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVK 159
Query: 535 XXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVF 708
++ ++ +A+ R++RTD GV AA V+S+K+ E + E K + E + F
Sbjct: 160 AGAVSADNAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTF 217
>UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr6 scaffold_3, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 504
Score = 55.6 bits (128), Expect = 2e-06
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Frame = +1
Query: 376 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYG--MQRNPG-VQTIXXXXXXXXXXXXYI 546
E+ P ++K +E ++KK+ M +GY G Y G MQR+ + TI I
Sbjct: 47 ESNPDQSVQK-WESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGI 105
Query: 547 TQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN-----------VEEINKRLPE 693
++ N + RSSRTDKGV + ++SLK+ + N +N LP
Sbjct: 106 RDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPN 165
Query: 694 TIKVFAV 714
IKVF++
Sbjct: 166 NIKVFSI 172
>UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
tRNA pseudouridine synthase A - Methanobacterium
thermoautotrophicum
Length = 275
Score = 55.6 bits (128), Expect = 2e-06
Identities = 32/95 (33%), Positives = 48/95 (50%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+K+A+ + Y G Y+G QR P V T+ I E+ + A+FQ + RTD
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGII-----EDPKRARFQIAGRTD 56
Query: 607 KGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFA 711
+GV A VS +++V +IN LP I+V A
Sbjct: 57 RGVHALGNFVSFFTEEDIHVNQINDLLPRDIRVLA 91
>UniRef50_Q8SS41 Cluster: Pseudouridylate synthase; n=1;
Encephalitozoon cuniculi|Rep: Pseudouridylate synthase -
Encephalitozoon cuniculi
Length = 345
Score = 54.4 bits (125), Expect = 4e-06
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++ +L+GY G Y+G+Q N + T+ I++ + + + + SSRTDK
Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63
Query: 610 GVSAAEQVVSLKLPLEVNVEEIN--KRL--PETIKVFAVKRVPNRFIPNLNAM 756
GV AA +VS+K+ L V+ E ++ + L E I ++ + R+ +P+ A+
Sbjct: 64 GVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQAI 116
>UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Pseudouridylate
synthase - Methanosphaera stadtmanae (strain DSM 3091)
Length = 274
Score = 53.2 bits (122), Expect = 9e-06
Identities = 28/103 (27%), Positives = 50/103 (48%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+++A+ + Y G ++G QR P +T+ I E+ A + + RTD
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNII-----EDTWTAHYSVAGRTD 56
Query: 607 KGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
KGV + V+S ++++ ++N LP+ IK+ RVP F
Sbjct: 57 KGVHSTGNVISFITDEDIHINQLNGLLPDDIKIIGEARVPYGF 99
>UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 634
Score = 52.8 bits (121), Expect = 1e-05
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRN--PGVQTIXXXXXXXXXXXXYITQEDFENA---QNA 579
++ ++K+A++ GY G Y G+Q N PG T+ I++E++E Q
Sbjct: 96 KLPKRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKL 155
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPL 654
++R+SRTDKGV A V+SL + L
Sbjct: 156 NWERASRTDKGVHALRNVISLNVML 180
>UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family
protein, expressed; n=7; Oryza sativa|Rep: TRNA
pseudouridine synthase family protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 516
Score = 52.0 bits (119), Expect = 2e-05
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 579
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE-----------INKRLPETIKVFAV 714
++RSSRTDKGV + ++SLK+ + E IN LP+ ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSV 181
>UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 264
Score = 52.0 bits (119), Expect = 2e-05
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 579
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE-----------INKRLPETIKVFAV 714
++RSSRTDKGV + ++SLK+ + E IN LP+ ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSV 181
>UniRef50_A2SU30 Cluster: Pseudouridylate synthase; n=1;
Methanocorpusculum labreanum Z|Rep: Pseudouridylate
synthase - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 281
Score = 51.6 bits (118), Expect = 3e-05
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
K+A L GY G + G Q P +T+ F +A+ A F+ + RTDK
Sbjct: 2 KLAFLAGYRGQNFAGSQYQPHKRTVEGEFVAGGIELGL-----FSDAKEAHFRTAGRTDK 56
Query: 610 GVSAAEQVVSLKLPL-EVNVEEINKRLPETIKVFAVKRVPNRFIPNLNA 753
GVSA Q+ S+ E+ +E +N LP+ I V F P A
Sbjct: 57 GVSARRQLFSITTEKPELAIEALNFHLPDDIWCIGAAEVDEEFYPRYAA 105
>UniRef50_A4S8M4 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 556
Score = 50.8 bits (116), Expect = 5e-05
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Frame = +1
Query: 421 KRKKMAMLLGYSGVEYYGMQRN---PGVQTIXXXXXXXXXXXXYITQEDFENA--QNAQF 585
K+K +A++L Y G Y G N P T+ I ++ + Q ++
Sbjct: 87 KKKPVAIVLAYVGQGYKGNTHNAQAPRGTTVDDVVEDALFAWGGILMPNYRSRGLQRLKW 146
Query: 586 QRSSRTDKGVSAAEQVVSLKLPLEVNV-----------EEINKRLPETIKVFAVKRVPNR 732
RSSRTDKGVS+ VVSL+ ++ V EI K LPE ++ FAV P
Sbjct: 147 SRSSRTDKGVSSLCTVVSLRAEIDPEVWTKDVEARETAREITKHLPEDVECFAVYNTPKS 206
Query: 733 FIPNLNAMLVHIATLFPRMCLNL 801
F ++ L P L+L
Sbjct: 207 FQARRECIMRTYEYLLPARVLDL 229
>UniRef50_Q1XD12 Cluster: TRNA pseudouridine synthase; n=1;
Pneumocystis carinii|Rep: TRNA pseudouridine synthase -
Pneumocystis carinii
Length = 227
Score = 50.8 bits (116), Expect = 5e-05
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +1
Query: 544 ITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVK 717
I + + ++ + + R++RTD+GV AA V+SLKL +E +E IN+ LPETI+V+ +
Sbjct: 21 IAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKLIIEQPNLLERINEALPETIRVWGIS 80
Query: 718 RVPNRFIP 741
R F P
Sbjct: 81 RTLKSFNP 88
>UniRef50_O74451 Cluster: Pseudouridylate synthase; n=1;
Schizosaccharomyces pombe|Rep: Pseudouridylate synthase
- Schizosaccharomyces pombe (Fission yeast)
Length = 413
Score = 50.8 bits (116), Expect = 5e-05
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Frame = +1
Query: 424 RKKMAM-LLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 600
RK+M ++ Y G + G+Q N V+TI + Q + ++ + + ++R
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94
Query: 601 TDKGVSAAEQVVSLKL----PLEVNVEEINKRLPETIKVFAVKRVPNRFIPN 744
TDKGV A V+ LK+ PL V +N LP I+V+ + R N F P+
Sbjct: 95 TDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPH 146
>UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 701
Score = 49.2 bits (112), Expect = 1e-04
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 412 ERIKRK-KMAMLLGYSGVEYYGMQRN--PGVQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
+R++RK K+ ++ GY G Y G+Q N P T+ I++ +F N + Q
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQ 109
Query: 583 ---FQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRL 687
F+R+SRTDKGV A VVS+ + L + KR+
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRV 147
>UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: tRNA
pseudouridine synthase - Halorubrum lacusprofundi ATCC
49239
Length = 293
Score = 47.6 bits (108), Expect = 4e-04
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +1
Query: 436 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFE-NAQNAQFQRSSRTDKG 612
A + Y G EY G QR P T+ + + D +A + + RTD G
Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAG 69
Query: 613 VSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
VSA Q V+ + P + N LP +++V+A VP F
Sbjct: 70 VSAVAQTVAFEAPDWLTPRAFNGHLPGSVRVWAAADVPAGF 110
>UniRef50_Q59S63 Cluster: tRNA pseudouridine synthase 1; n=2;
Saccharomycetales|Rep: tRNA pseudouridine synthase 1 -
Candida albicans (Yeast)
Length = 450
Score = 46.8 bits (106), Expect = 8e-04
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +1
Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRF 735
FQR++RTDKGV AA V+SLK+ +E + +IN LP+ I+++ ++R F
Sbjct: 41 FQRAARTDKGVHAAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRATKGF 93
>UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG3045-PA
- Apis mellifera
Length = 406
Score = 46.4 bits (105), Expect = 0.001
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Frame = +1
Query: 337 LTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLG--YSGVEYYGMQRNPGVQTIXX 510
L + NK+ ++D K +KP++ K K +LL Y G +Y G VQ
Sbjct: 33 LEKENKQLKNKDIIRKS----QKPFDFSKCNKRHILLKFYYLGWDYNGFV----VQESID 84
Query: 511 XXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE------ 672
I E+ + + + R RTDKGVS+ QV+SL + ++N E+
Sbjct: 85 NTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVSSFSQVISLDIRSKLNPEDQYKLED 144
Query: 673 -------INKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLFPRMCLNL 801
+N+ LP I+ A VPN F N FPR LN+
Sbjct: 145 ELPYCKILNRLLPSNIRCIAWCPVPNDFSARFNCKFRTYKYFFPRGNLNI 194
>UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tRNA
pseudouridine; n=1; Aspergillus niger|Rep: Catalytic
activity: tRNA uridine <=> tRNA pseudouridine -
Aspergillus niger
Length = 517
Score = 46.0 bits (104), Expect = 0.001
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Frame = +1
Query: 361 AHRDWETKPPGEIKKPYE----RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXX 528
A + + KPP K E R + +A+ Y G Y G++ G T
Sbjct: 81 AEKKKQVKPPKPPKPRREIDPSRYNTRFIALKFAYLGQRYNGLEHANGNATPLPTIEEEM 140
Query: 529 XXXXYITQED---FENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEV-NVEEINKRLPET 696
T+E + N ++ ++ RTD+GVSA QV+ +++ E+ V +NK LPE
Sbjct: 141 YKALRKTRETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRNELPYVSMLNKVLPED 200
Query: 697 IKVFA-VKRVPNRF 735
I+V A R P F
Sbjct: 201 IRVLAWCPRPPEGF 214
>UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4;
Thermococcaceae|Rep: tRNA pseudouridine synthase A -
Pyrococcus furiosus
Length = 266
Score = 46.0 bits (104), Expect = 0.001
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++A+ + Y G +++G QR P V+TI +FEN F+ +SRTD+
Sbjct: 2 RVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGI----EFEN-----FKSASRTDR 52
Query: 610 GVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLFP 783
GVSA V++L + N +N R+ + + ++ + VP F P A P
Sbjct: 53 GVSARGNVIALSTEDDRIKNPMVLNSRMSD-VWIWGIAEVPEDFHPRFWANTKVYRYYLP 111
Query: 784 RMCLNL 801
+ +N+
Sbjct: 112 SLGMNI 117
>UniRef50_A7PC02 Cluster: Chromosome chr2 scaffold_11, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_11, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 370
Score = 45.6 bits (103), Expect = 0.002
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 591
R R ++L Y G + G Q+ PG+ T+ + +N +
Sbjct: 91 RWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGM 150
Query: 592 ---SSRTDKGVSAAEQVVSL---KLPLEV-NVEE-INKRLPETIKVFAVKRVPNRFIPNL 747
+ RTDKGV+A +QV S K ++V ++E+ IN P ++V +V V F PN
Sbjct: 151 VTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNF 210
Query: 748 NAMLVHIATLFP 783
+A H +FP
Sbjct: 211 SAKWRHYFYIFP 222
>UniRef50_Q54TQ3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 504
Score = 45.6 bits (103), Expect = 0.002
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Frame = +1
Query: 415 RIKRKKM--AMLLGYSGVEYYGMQRNPGVQ--TIXXXXXXXXXXXXYITQEDFENAQNAQ 582
+I +KK+ AM+ GY G YYG+ ++ +I +I + + +
Sbjct: 83 KINKKKLSVAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLK 142
Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVN----------VEEINKRLPETIKVFAVKRVPNR 732
+ SSRTDKGV + V+S L ++ N ++ IN LP +I++F+ +V
Sbjct: 143 WSHSSRTDKGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRS 202
Query: 733 F 735
F
Sbjct: 203 F 203
>UniRef50_Q54LM5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 615
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +1
Query: 394 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQ--TIXXXXXXXXXXXXYITQEDFEN 567
EI++ + +K MA+ Y+G +YYG + ++ I +I E+ N
Sbjct: 137 EIEQNLKDKSKKPMALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGN 196
Query: 568 AQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEI 675
+ + RSSRTDKGV + V+S L ++ E +
Sbjct: 197 LKRIKLSRSSRTDKGVHSVSTVISAFLLIDKETERL 232
>UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n=1;
unknown|Rep: UPI00015BE519 UniRef100 entry - unknown
Length = 247
Score = 45.2 bits (102), Expect = 0.002
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
K + + G Y G Q P V TI YI + Q + SRTD
Sbjct: 2 KNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLY---YIVNKKKPIKQKIRAIGCSRTD 58
Query: 607 KGVSAAEQVVSLKLPLEVNV----EEINKRLPETIKVFAVKRVPNRFIPNLNAM 756
KGV A E V ++K+ + ++ + +N LP+ IK+ ++ VP F +A+
Sbjct: 59 KGVHAIEFVFNVKMEFDKDLNFLRKALNSALPKDIKIHNIEEVPLEFNSRFDAL 112
>UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3;
Halobacteriaceae|Rep: tRNA pseudouridine synthase A -
Haloarcula marismortui (Halobacterium marismortui)
Length = 275
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/100 (30%), Positives = 43/100 (43%)
Frame = +1
Query: 436 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGV 615
A + Y G Y+G QR P V T+ E E + ++ + RTD GV
Sbjct: 3 AYRVAYDGQPYHGFQRQPDVDTVEGRLRSALVRLGVC--ERGEGLPD-RYAAAGRTDAGV 59
Query: 616 SAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
SA Q V+ P ++ N LP ++V+A VP F
Sbjct: 60 SARTQTVAFDAPAWLSPAAFNGELPNDVRVWASADVPEDF 99
>UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5;
Archaea|Rep: tRNA pseudouridine synthase A -
Methanosarcina acetivorans
Length = 269
Score = 44.4 bits (100), Expect = 0.004
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++A+ L Y G E++G Q P V+T+ I E+ ++A + + RTD
Sbjct: 2 RVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSII-----ESPKSADYTCAGRTDA 56
Query: 610 GVSAAEQVVSL--KLPLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVH 765
GV A QVV+ + P IN LP I +A VP F +A+ H
Sbjct: 57 GVHALGQVVAFDTEKPNLAIPRVINSELPPAIWAWAHAEVPYYFDARRSAVSRH 110
>UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 276
Score = 44.0 bits (99), Expect = 0.005
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++A +GY G ++G Q P +T+ IT + Q ++ S RTD+
Sbjct: 12 RLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIIT-----SRQVSRLALSGRTDR 66
Query: 610 GVSAAEQVVSLKL-PLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAML 759
GV A Q+++L ++ V +N +LP I V A P F P + ++
Sbjct: 67 GVHAKCQILALSTHNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVII 117
>UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: Pseudouridylate
synthase - Haloquadratum walsbyi (strain DSM 16790)
Length = 276
Score = 44.0 bits (99), Expect = 0.005
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = +1
Query: 436 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGV 615
A L Y G + G QR P V T+ ++ +++ + + + RTD GV
Sbjct: 7 AFRLAYDGRPFSGFQRQPSVPTVEDALFDALDSLDVFNRDT--DSKPSGYAAAGRTDAGV 64
Query: 616 SAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
SA Q V + P +N LP +++ +A V + F
Sbjct: 65 SALRQTVGFECPSWCTPRALNSELPTSVRAWASADVQSGF 104
>UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_180_17283_16483 - Giardia lamblia
ATCC 50803
Length = 266
Score = 43.6 bits (98), Expect = 0.007
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 382 KPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQ-TIXXXXXXXXXXXXYITQED 558
KP + I + +A+ + Y G EY G+ + P + TI I Q
Sbjct: 76 KPSSRSLMDWSTIPLRHIAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQH- 134
Query: 559 FENAQNAQFQRSSRTDKGVSAAEQVVS 639
A + F+RS RTD+GVSAA QV S
Sbjct: 135 -AEASDVHFERSGRTDRGVSAAGQVFS 160
>UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 351
Score = 43.6 bits (98), Expect = 0.007
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGV--QTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 597
++K+ + GY+G Y+G+Q GV +T+ I +++ + + + R +
Sbjct: 7 KQKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGA 66
Query: 598 RTDKGVSAAEQVVSLKL---------PLEVNVEEINKRLPETIKV--FAVKRVPNRFIPN 744
RTDKGV A +++KL ++ N EEI +L + KV V V N +PN
Sbjct: 67 RTDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPN 126
>UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein;
n=3; Leishmania|Rep: Pseudouridylate synthase-like
protein - Leishmania major
Length = 696
Score = 42.3 bits (95), Expect = 0.017
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Frame = +1
Query: 571 QNAQFQRSSRTDKGVSAAEQVVSLKLPLEV---------NVEEINKRLPETIKVFAVKRV 723
++ F RS RTD+GV A +VSL +P EV E++N++LP T++V V ++
Sbjct: 78 EHHHFARSCRTDRGVHAIRNMVSLFVPKEVFEKMGQAEGICEKLNRQLPATVRVANVMQL 137
Query: 724 PNRFIP 741
FIP
Sbjct: 138 SGSFIP 143
>UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 345
Score = 42.3 bits (95), Expect = 0.017
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 439 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 618
+L Y G +Y+G+Q+N T+ +++ + N ++ +SRTD GV
Sbjct: 31 LLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAGVH 90
Query: 619 AAEQVVSLK------LPLEVNVEEINKRLPET 696
A QV+S K + + + INK+LP T
Sbjct: 91 ACAQVLSFKASGLKGICIADIPDLINKQLPRT 122
>UniRef50_Q6MDE3 Cluster: tRNA pseudouridine synthase A 2; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: tRNA
pseudouridine synthase A 2 - Protochlamydia amoebophila
(strain UWE25)
Length = 262
Score = 42.3 bits (95), Expect = 0.017
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Frame = +1
Query: 370 DWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYIT 549
D+ T+ + K + IK K + Y G Y+G Q+ P ++ T
Sbjct: 2 DYTTQSDLSLSKSMQNIKLK-----IAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHT 56
Query: 550 QEDFENAQNAQFQRSSRTDKGVSAAEQVVSLK-----LPLEVNVEEINKRLPETIKVFAV 714
Q +SRTDKGV A Q+V+ L+ + +N LP +++ +
Sbjct: 57 ---------ISLQAASRTDKGVHARGQIVNFLTTKSITDLQKFILSLNSLLPTDLRILSA 107
Query: 715 KRVPNRFIPNLNAM 756
+++P+ F P LN +
Sbjct: 108 EKMPSTFHPTLNCV 121
>UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3;
Fusobacterium nucleatum|Rep: tRNA pseudouridine synthase
A - Fusobacterium nucleatum subsp. nucleatum
Length = 247
Score = 41.9 bits (94), Expect = 0.022
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +1
Query: 418 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 597
++RK + + Y G YYG QR P T+ +T+E+ N +A
Sbjct: 3 MRRKNIKIEFRYDGSSYYGFQRQPNKITV---QGEIEKVLRIVTKEEI-NLISA-----G 53
Query: 598 RTDKGVSAAEQV----VSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAML 759
RTD+GV A QV S +P+E + + LP I + +V+ V F NA +
Sbjct: 54 RTDRGVHANHQVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNAKM 111
>UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Pseudouridylate synthase
- Uncultured methanogenic archaeon RC-I
Length = 266
Score = 41.5 bits (93), Expect = 0.029
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
K A+ + Y G +YG Q PG+ T+ +E + + RTD
Sbjct: 2 KTALKIAYVGTNFYGSQAQPGLPTVESELRK-------ALEEAGAIKLGTKIAMAGRTDA 54
Query: 610 GVSAAEQVVSLKL--PLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNA 753
GV A QVV+ + P IN +LP+ + +A VP+ F P +A
Sbjct: 55 GVHALGQVVAFEQADPKLTAPRIINSKLPKDLWAYARAEVPDDFDPRRHA 104
>UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase A - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 246
Score = 41.5 bits (93), Expect = 0.029
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
KK+ + Y G Y+G Q P T+ N + + S RTD
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKI---------NKKKVKIHSSGRTD 52
Query: 607 KGVSAAEQVVSLKLPLEVNVEEINKR-----LPETIKVFAVKRVPNRFIPNLNA 753
KGV A +Q+++ + + + + + K L +IK+ ++ V N F P +A
Sbjct: 53 KGVHAKKQIITFDIKINIQLNNLKKALNAILLKNSIKILKLRYVKNSFHPRFSA 106
>UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1;
Candidatus Methanoregula boonei 6A8|Rep: tRNA
pseudouridine synthase A - Methanoregula boonei (strain
6A8)
Length = 276
Score = 41.1 bits (92), Expect = 0.038
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
++A + Y G +YG Q+ +T+ F + + A F + RTD+
Sbjct: 16 RLACRVSYLGTRFYGSQQQESSRTVEGEFIEACRRLAL-----FSDWRTAGFASAGRTDR 70
Query: 610 GVSAAEQVVSLKLPLEVNVEE-INKRLPETIKVFAVKRVPNRFIPNLNA 753
GV A QV++ + +N +LP I A VP+ F P +A
Sbjct: 71 GVHACGQVIAFSTQTPDRARQALNSQLPPDIWCTATAVVPDHFHPRYDA 119
>UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahymena
thermophila SB210|Rep: Pseudouridylate synthase -
Tetrahymena thermophila SB210
Length = 481
Score = 40.7 bits (91), Expect = 0.050
Identities = 29/120 (24%), Positives = 49/120 (40%)
Frame = +1
Query: 376 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 555
E K + + +E +++ A+ + Y G+ Y G+ +
Sbjct: 95 EQKQNNKKESLFEIYQQQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTL--- 151
Query: 556 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
+N N F RS RTDKGVSA QV+ + L + + E N + I++ +V F
Sbjct: 152 -IKNRDNCNFTRSGRTDKGVSALGQVIGITLRTSIKIGE-NIDEIDDIRILGCSKVDPAF 209
>UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1;
Schizosaccharomyces pombe|Rep: Pseudouridylate synthase
- Schizosaccharomyces pombe (Fission yeast)
Length = 450
Score = 40.7 bits (91), Expect = 0.050
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 9/174 (5%)
Frame = +1
Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYY 471
K++ + +I P L + A +D + P + +P++ K +A Y G Y
Sbjct: 47 KNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYN 106
Query: 472 GM--QRNPG-VQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSL 642
G+ Q P + T+ IT + + F R RTDKGVSA QV+SL
Sbjct: 107 GLAYQLEPTPLPTVEGKVFEALLRAHLIT-----DPSSCSFSRCGRTDKGVSAMGQVISL 161
Query: 643 KL------PLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLFPR 786
+ P+ + + +N+ LP I++ P F + H LF +
Sbjct: 162 NVRHSERRPI-IYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTK 214
>UniRef50_Q654A2 Cluster: Pseudouridylate synthase; n=3; Oryza
sativa|Rep: Pseudouridylate synthase - Oryza sativa
subsp. japonica (Rice)
Length = 495
Score = 40.3 bits (90), Expect = 0.067
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 591
R +R ++L Y G + G Q+ PG+ T+ + A++ +
Sbjct: 117 RWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGC 176
Query: 592 ---SSRTDKGVSAAEQVVSL----KLPLEVNVEE-INKRLPETIKVFAVKRVPNRFIPNL 747
+ RTDKGV+A +QV S K ++++ INK P+ ++ V +V F PN
Sbjct: 177 AVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNF 236
Query: 748 NAMLVHIATLFP 783
A +FP
Sbjct: 237 AAKWRRYLYIFP 248
>UniRef50_Q8KDR7 Cluster: tRNA pseudouridine synthase A; n=9;
Chlorobiaceae|Rep: tRNA pseudouridine synthase A -
Chlorobium tepidum
Length = 247
Score = 40.3 bits (90), Expect = 0.067
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
++ + M + Y G Y G QR PG + I QE + RT
Sbjct: 5 KRTIKMQIEYDGTGYSGWQRQPG--DVVTVQGEIERVLERIMQEP------VSIDGAGRT 56
Query: 604 DKGVSAAEQVVSLK----LPLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNA 753
D GV A QV S +PL + N LP TI++ A+++ P F +A
Sbjct: 57 DSGVHARRQVASFATCSPMPLGRLIYSANSLLPSTIRINAMRQAPESFHARFSA 110
>UniRef50_Q8GUL5 Cluster: Putative uncharacterized protein
At5g35400; n=1; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At5g35400 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 420
Score = 39.5 bits (88), Expect = 0.12
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 591
R +R ++L Y+G + G Q+ P + T+ + + +
Sbjct: 89 RWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGR 148
Query: 592 ---SSRTDKGVSAAEQVVSL---KLPLE-VNVEE-INKRLPETIKVFAVKRVPNRFIPNL 747
+ RTDKGVSA QV S + +E + +E+ INK ++V ++ +V F PN
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNF 208
Query: 748 NAMLVHIATLFP 783
+A +FP
Sbjct: 209 SAKWRRYLYIFP 220
>UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11;
Francisella tularensis|Rep: tRNA pseudouridine synthase
A - Francisella tularensis subsp. tularensis
Length = 258
Score = 39.5 bits (88), Expect = 0.12
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 571 QNAQFQRSSRTDKGVSAAEQVVSL----KLPLEVNVEEINKRLPETIKVFAVKRVPNRFI 738
QN + + RTD GV A Q+V+ PL +N LP+ IK+ AV++V N F
Sbjct: 41 QNIEVTCAGRTDTGVHATSQIVNFYSNADRPLSAWQRGVNALLPQDIKILAVQQVDNNFN 100
Query: 739 PNLNAM 756
A+
Sbjct: 101 SRFTAI 106
>UniRef50_Q22RZ3 Cluster: TRNA pseudouridine synthase family
protein; n=1; Tetrahymena thermophila SB210|Rep: TRNA
pseudouridine synthase family protein - Tetrahymena
thermophila SB210
Length = 484
Score = 39.1 bits (87), Expect = 0.15
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQ--RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
K+A+ GY+G Y+G Q ++ ++TI I++ + A + R +RT
Sbjct: 12 KVAIFFGYNGKGYHGSQSQKDQNIKTIEKSLFEGLIDSKLISETHMGELKKAGWGRGART 71
Query: 604 DKGVSAAEQVVSLKLPL 654
DKGV A V++KL +
Sbjct: 72 DKGVHALCNGVNVKLAI 88
>UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 414
Score = 39.1 bits (87), Expect = 0.15
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = +1
Query: 421 KRKKMAMLLGYSGVEYYGMQRNPGVQ-TIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 597
K ++A L Y G+ Y+G+++ Q TI I +N + + R+
Sbjct: 47 KFTRVAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMI-----DNRDDCNYTRAG 101
Query: 598 RTDKGVSAAEQVVSLKLPL-----EVNVEEINKRLPETIKVFAVKRVPNRF 735
RTDKGVSA VV+L + ++ + +N+ LPE I++ V +F
Sbjct: 102 RTDKGVSAIGNVVALNVRKIGKSDKLYAQILNRVLPEDIQILDECIVDEKF 152
>UniRef50_A3CXX4 Cluster: Pseudouridylate synthase; n=1;
Methanoculleus marisnigri JR1|Rep: Pseudouridylate
synthase - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 270
Score = 39.1 bits (87), Expect = 0.15
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 433 MAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKG 612
+A Y G ++G Q P + T+ F++ + A F + RTD+G
Sbjct: 3 LAFRFSYFGDRFFGSQMQPDLCTVEGEFIGACRLLRL-----FDDWREANFATAGRTDRG 57
Query: 613 VSAAEQVVS-LKLPLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAM 756
V A QV S L E +E +N+ LP I P+ F P +A+
Sbjct: 58 VHARSQVCSFLTDKPERAIEALNRVLPADIWCTGWAEAPDGFHPRYSAV 106
>UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1;
Methanosaeta thermophila PT|Rep: Pseudouridylate
synthase - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 267
Score = 39.1 bits (87), Expect = 0.15
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
K+A+ + Y G YYG QR PG++T+ N F + RTD+
Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRI---------GVANGDFCYAGRTDR 52
Query: 610 GVSAAEQVV 636
GVSA QV+
Sbjct: 53 GVSALGQVI 61
>UniRef50_Q6F1W2 Cluster: tRNA pseudouridine synthase A; n=3;
Mollicutes|Rep: tRNA pseudouridine synthase A -
Mesoplasma florum (Acholeplasma florum)
Length = 251
Score = 39.1 bits (87), Expect = 0.15
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR--SSRT 603
K + L Y G +++G P TI + + +NA F+ +S+T
Sbjct: 3 KFLITLEYDGSDFHGWIEQPKTSTIQGE----------LNKAINRVTKNAVFKTIGASKT 52
Query: 604 DKGVSAAEQVVSLKL----PLEVNVEEINKRLPETIKVFAVKRVPNRF 735
D GV A +Q V L L L++ + INK LPETIKV +++ V F
Sbjct: 53 DTGVHAIDQKVLLDLGFNPKLDLFKKAINKALPETIKVRSIEEVKQDF 100
>UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Lactobacillus plantarum
Length = 262
Score = 39.1 bits (87), Expect = 0.15
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +1
Query: 439 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 618
++L Y G + G QR P +T+ + + + + + RTD GV
Sbjct: 7 VVLAYDGTNFAGFQRQPHQRTVEQVVTKA------VNKMAKDPVEPIVIYGAGRTDAGVH 60
Query: 619 AAEQVVSLKLPLEVNVEEI----NKRLPETIKVFAVKRVPNRF 735
A Q + LP E+N E + N LP V AV VPN F
Sbjct: 61 AFGQTLHFDLPYEINPEGVRRGLNSMLPMDTIVKAVSIVPNDF 103
>UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:
LOC100101318 protein - Xenopus laevis (African clawed
frog)
Length = 507
Score = 38.7 bits (86), Expect = 0.20
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +1
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVN-------VEEINKRLPETIKVFAVKR 720
E+ Q + + R RTD+GVSA QV+SL L V +N+ LP I+V +
Sbjct: 100 ESRQTSNYHRCGRTDRGVSALAQVISLDLRCSAEGKPEIRYVHILNRVLPPDIRVLSWAP 159
Query: 721 VPNRFIPNLNAMLVHIATLFP 783
VP F + LFP
Sbjct: 160 VPPSFSARFSCGSRTYRYLFP 180
>UniRef50_Q8IAP2 Cluster: Putative uncharacterized protein
PF08_0123; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF08_0123 - Plasmodium
falciparum (isolate 3D7)
Length = 530
Score = 38.7 bits (86), Expect = 0.20
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 343 RYNKRRAHRDWETKPPGEIKKPYERIKR-----KKMAMLLGYSGVEYYGMQ-RNPGVQTI 504
R K + R K E K+ YE ++ KK A+ +GY G +Y+G Q + +TI
Sbjct: 18 RIKKLKLERQAIKKKEEEGKEKYENEEKNNLNLKKYALCIGYIGSQYHGCQGQGENCETI 77
Query: 505 XXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSA 621
I ++ F N RS+RTD+GV A
Sbjct: 78 ENTLERTLLKINAIKKKKFFKNFNFCLSRSARTDQGVHA 116
>UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Streptococcus mutans
Length = 249
Score = 38.7 bits (86), Expect = 0.20
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +1
Query: 442 LLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSA 621
++ Y G + G QR P V+T+ T + Q + + RTD GV A
Sbjct: 7 IISYDGTNFSGFQRQPQVRTVQEEIEK--------TLLRLNSGQAVKIHGAGRTDAGVHA 58
Query: 622 AEQVVSLKLPLEVNVEE----INKRLPETIKVFAVKRVPNRF 735
QV+ LP + ++E+ ++ + P+ I V V++V + F
Sbjct: 59 YGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDF 100
>UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1;
Caminibacter mediatlanticus TB-2|Rep: Pseudouridylate
synthase - Caminibacter mediatlanticus TB-2
Length = 223
Score = 38.3 bits (85), Expect = 0.27
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 574 NAQFQRSSRTDKGVSAAEQVVSLKLP----LEVNVEEINKRLPETIKVFAVKRVPNRFIP 741
N+ Q + RTDKGV A QV+S +P L +NK + I + +K + N F P
Sbjct: 24 NSIVQHAGRTDKGVHALNQVISFTIPNFWDLNKLQTSLNKIIHPYIHIKKIKFIKNDFNP 83
Query: 742 NLNA 753
NA
Sbjct: 84 RFNA 87
>UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2;
Desulfitobacterium hafniense|Rep: Pseudouridylate
synthase - Desulfitobacterium hafniense (strain Y51)
Length = 271
Score = 37.9 bits (84), Expect = 0.36
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
++ + + + Y G Y+G QR P + +E N + RT
Sbjct: 4 KRNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNT-------AGRT 56
Query: 604 DKGVSAAEQVVSLKLPLEVNVEEI----NKRLPETIKVFAVKRVPNRFIPNLNA 753
D GV AA QVV+ + + V++I N LP I++ A + F +A
Sbjct: 57 DTGVHAAGQVVNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAENFHARFSA 110
>UniRef50_A0LIV1 Cluster: Pseudouridylate synthase; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Pseudouridylate
synthase - Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB)
Length = 261
Score = 37.5 bits (83), Expect = 0.47
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 588
Y+ +RK ++L Y G Y+G QR GV TI ++ + +
Sbjct: 4 YDLPERKNFKLILEYDGSHYHGWQRQLGVLTIQEVLE---------SRLEVMLQSPVGVR 54
Query: 589 RSSRTDKGVSAAEQVVSLKLPLEVNVEE----INKRLPETIKVFAVKRVPNRFIPNLNA 753
S RTD GV A QVV+ + + EE IN LP I V + F +A
Sbjct: 55 ASGRTDAGVHACGQVVNFHVHTRLRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSA 113
>UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep:
Zgc:56653 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 386
Score = 37.1 bits (82), Expect = 0.62
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 397 IKKPYE--RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENA 570
++KP++ R+ +A+ L Y G +Y G VQ + + ++
Sbjct: 46 VEKPFDFSAHPRRHVALRLAYLGWQYQGF----AVQENTDNTVEARLFEALLKTKLIQDR 101
Query: 571 QNAQFQRSSRTDKGVSAAEQVVSLKL 648
Q + + R RTDKGVSA QV+S+ L
Sbjct: 102 QTSCYHRCGRTDKGVSAFSQVISIDL 127
>UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2;
Culicidae|Rep: Pseudouridylate synthase - Aedes aegypti
(Yellowfever mosquito)
Length = 467
Score = 36.7 bits (81), Expect = 0.82
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETI 699
EN + + + R RTDKGVSA QVVSL + + E N+ PE+I
Sbjct: 115 ENRETSNYHRCGRTDKGVSAFHQVVSLDVRSKFAPE--NQLEPESI 158
>UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetaceae|Rep: Pseudouridylate synthase -
Pichia stipitis (Yeast)
Length = 465
Score = 36.7 bits (81), Expect = 0.82
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGM--QRNPG-VQTIXXXXXXXXXXXXYITQEDFENAQNAQF 585
+ ++ +A+ Y G Y G+ Q P + T+ IT+ +F
Sbjct: 85 KYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEP---TPDKCKF 141
Query: 586 QRSSRTDKGVSAAEQVVSLKLPLEVNVEE 672
R RTDKGVSA QV+SL + +N EE
Sbjct: 142 SRCGRTDKGVSAMNQVISLVVRSNLNEEE 170
>UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultured
archaeon GZfos10C7|Rep: Pseudouridylate synthase -
uncultured archaeon GZfos10C7
Length = 284
Score = 36.7 bits (81), Expect = 0.82
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNP--GVQTIXXXXXXXXXXXXYITQEDFENAQNAQF 585
E +++++A+ +GY G Y+G Q P + TI I E+ + A +
Sbjct: 3 EERQKERIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGII-----EDRKTANY 57
Query: 586 QRSSRTDKGVSAAEQVVSLKLPLE-VNVEEINKRLPE-TIKVFAVKR 720
+ RTD GV A QVVS + IN LP+ +I V A+ +
Sbjct: 58 SAAGRTDTGVHALAQVVSFVTSNQNTTPRMINSVLPDGSIWVSAIAK 104
>UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5;
Saccharomycetales|Rep: tRNA pseudouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 442
Score = 36.7 bits (81), Expect = 0.82
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Frame = +1
Query: 571 QNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE----------------INKRLPETIK 702
Q+ +F R RTDKGVSA QV+SL++ + EE +N+ LP+ I+
Sbjct: 140 QDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 199
Query: 703 VFAV-KRVPNRFIPNLNAMLVHIATLFPRMCLNL 801
+ AV R P F + + H +F LN+
Sbjct: 200 ISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNI 233
>UniRef50_Q5CPW7 Cluster: Pus1p-like type II pseudousynthas TruA;
n=2; Cryptosporidium|Rep: Pus1p-like type II
pseudousynthas TruA - Cryptosporidium parvum Iowa II
Length = 501
Score = 36.3 bits (80), Expect = 1.1
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Frame = +1
Query: 412 ERIKRKKMAMLLGYSGVEYYGMQ----RNPGVQTIXXXXXXXXXXXXYITQEDFENAQN- 576
E I K M GY G +Y+GMQ N V+ + + N QN
Sbjct: 3 EVIPMKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQND 62
Query: 577 --------AQFQRSSRTDKGVSAAEQVVSLKLPLEVNVE-EI---NKRLPETIKVFAVKR 720
++ R RTDKGV + QVVS + +++N E E+ NK + E I +
Sbjct: 63 DQGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINDELELILKNKDVDEKIIEICKRL 122
Query: 721 VPNRFIPNLNAM 756
R I N N +
Sbjct: 123 KEERDILNKNGV 134
>UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetales|Rep: Pseudouridylate synthase -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 491
Score = 36.3 bits (80), Expect = 1.1
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Frame = +1
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE----------------INKRLPE 693
E + ++ + RTDKGVSA QV+S+KL + +E IN LP
Sbjct: 173 EPIEEVEYSKCGRTDKGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPA 232
Query: 694 TIKVFAV-KRVPNRFIPNLNAMLVHIATLF 780
IKV A+ R P F + H LF
Sbjct: 233 DIKVHAICLRPPENFDARFSCKERHYRYLF 262
>UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1;
Archaeoglobus fulgidus|Rep: tRNA pseudouridine synthase
A - Archaeoglobus fulgidus
Length = 265
Score = 36.3 bits (80), Expect = 1.1
Identities = 27/104 (25%), Positives = 42/104 (40%)
Frame = +1
Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
K A + Y G ++G Q P +T+ +N + + + RTD
Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRL---------GVENPRLRSAGRTDA 53
Query: 610 GVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNRFIP 741
GV A QV+S ++ +N LPE I +A +V F P
Sbjct: 54 GVHAYGQVISFYSEDKIFPRMLNAELPEDITAWAWAKVSEDFDP 97
>UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3;
Tetraodontidae|Rep: Pseudouridylate synthase - Tetraodon
nigroviridis (Green puffer)
Length = 412
Score = 35.9 bits (79), Expect = 1.4
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
R+ +A+ L Y G Y G + Q+ Q++ + R RT
Sbjct: 72 RRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQD----RQSSNYHRCGRT 127
Query: 604 DKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKV-----FAVKRVPNRFIPNLNAMLVH 765
DKGVSA QV++++ + +LPE + AV +P ++ LN +L H
Sbjct: 128 DKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELP--YVKMLNRVLPH 184
>UniRef50_Q08Z59 Cluster: Pseudouridylate synthase; n=2;
Cystobacterineae|Rep: Pseudouridylate synthase -
Stigmatella aurantiaca DW4/3-1
Length = 303
Score = 35.9 bits (79), Expect = 1.4
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Frame = +1
Query: 418 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 597
+KR + L Y G ++G QR P T+ A +
Sbjct: 24 LKRLSTTLWLWYRGGGFHGFQRQPEGPTVQSTLEAVLR----------STGVPATVMPAG 73
Query: 598 RTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIK----VFAVKRVPNRF 735
RTD+GV A QVVSL+L E + RLP + V AV+R P F
Sbjct: 74 RTDRGVHARMQVVSLRLEAGDTPEALAARLPALLPPDLGVCAVRRPPPSF 123
>UniRef50_Q0UN59 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 498
Score = 35.9 bits (79), Expect = 1.4
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 393 RNQKTIRKD*EKKNGYAAGVLRS*IL---RYA--TKSWCTNNRRRIIKSIVG 533
R+ T R + EK+NGY + S +L YA KSWC N +I+ S+ G
Sbjct: 168 RSADTRRDEAEKRNGYITRPMNSFMLYRSAYAERAKSWCAQNNHQIVSSVAG 219
>UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea
longicatena DSM 13814|Rep: Pseudouridylate synthase -
Dorea longicatena DSM 13814
Length = 245
Score = 35.5 bits (78), Expect = 1.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 598 RTDKGVSAAEQVVSLKLPLEVNVEEI----NKRLPETIKVFAVKRVPNRFIPNLNA 753
RT+ GV A Q+ + K + I N+ LP I + VK VP RF LNA
Sbjct: 54 RTEVGVHAYAQIANFKTSSSTTTQNIKHYLNRYLPMDIAIIDVKEVPERFHAQLNA 109
>UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 464
Score = 33.1 bits (72), Expect(2) = 2.3
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +1
Query: 376 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 555
++KP E + R +++A+ L Y G + +G + + +
Sbjct: 65 KSKPRKEFD--FSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVK- 121
Query: 556 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKL 648
+ ++ + R RTDKGVSA QV+SL +
Sbjct: 122 ---SRESCSYSRCGRTDKGVSAFGQVISLNV 149
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 664 VEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLFPRMCLNL 801
V+ +NK LP+ I+V A V F + LFP L++
Sbjct: 182 VDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYLFPSANLDI 227
>UniRef50_UPI00015653AF Cluster: tRNA-pseudouridine synthase A; n=1;
Symbiobacterium thermophilum IAM 14863|Rep:
tRNA-pseudouridine synthase A - Symbiobacterium
thermophilum IAM 14863
Length = 267
Score = 35.1 bits (77), Expect = 2.5
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+ + ++L Y G Y G QR P TI +T E A + RTD
Sbjct: 2 RTIKLILAYDGTAYAGFQRQPNGITIQQRLEEALRA---VTGEPDLRIGAA----AGRTD 54
Query: 607 KGVSAAEQVVSLK----LPLEVNVEEINKRLPETIKVFAVKRVPNRF 735
GV A QVV L+ +P++ +N LP+ I V + P F
Sbjct: 55 AGVHARGQVVHLRTYATIPIDRWPAALNGHLPDDIAVIGAEEAPPDF 101
>UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2;
Anaeromyxobacter|Rep: tRNA-pseudouridine synthase I -
Anaeromyxobacter sp. Fw109-5
Length = 265
Score = 35.1 bits (77), Expect = 2.5
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Frame = +1
Query: 418 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 597
++R+ A+ + Y G + G QR PG+ T+ A ++
Sbjct: 1 MERRFYALRVAYEGGRFRGFQRQPGLPTVQDALEGALLAAGV----------RATLAVAA 50
Query: 598 RTDKGVSAAEQVVSLKLPLEVNVE----EINKRLPETIKVFAVKRVPNRF 735
RTD GV A +QVVS ++ +N LPE + V V RV F
Sbjct: 51 RTDAGVHALDQVVSFSARAALDPAALRGALNAALPEGVAVLEVLRVAPSF 100
>UniRef50_Q7RDA0 Cluster: Putative uncharacterized protein PY05524;
n=10; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05524 - Plasmodium yoelii yoelii
Length = 1510
Score = 35.1 bits (77), Expect = 2.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 717 KSTKQIHSKSKCNARSYSYTLPTYVFEPSLVXMKRERLXDTAEK 848
K TK ++ C+ R Y Y PTYV P + K E+L + K
Sbjct: 1237 KVTKSFDARKFCSFRLYEYLFPTYVLSPVQIVPKYEQLFQESVK 1280
>UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2;
Acidobacteria|Rep: Pseudouridylate synthase -
Acidobacteria bacterium (strain Ellin345)
Length = 257
Score = 34.7 bits (76), Expect = 3.3
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+ + L Y G E++G Q PG TI T E Q Q S RTD
Sbjct: 3 RNFKITLAYDGHEFHGWQIQPGKPTIQGTLAE--------TIERITGEQTLP-QGSGRTD 53
Query: 607 KGVSAAEQVVSLKLPLEVNVE----EINKRLPETIKVFAV 714
GV A QV S+ L + + +N +LP +I+ V
Sbjct: 54 AGVHALGQVASVALQTPIPADGLHIALNDKLPPSIRALTV 93
>UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4;
Clostridia|Rep: Pseudouridylate synthase - Alkaliphilus
metalliredigens QYMF
Length = 255
Score = 34.7 bits (76), Expect = 3.3
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVNVEEI----NKRLPETIKVFAVKRVPNRFIPNLNAM 756
S RTD GV A QV S +L ++ E I N +LP I + K +P F +A+
Sbjct: 48 SGRTDAGVHAQGQVASFQLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAI 106
>UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19;
Euteleostomi|Rep: tRNA pseudouridine synthase 3 - Homo
sapiens (Human)
Length = 481
Score = 34.7 bits (76), Expect = 3.3
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKL 648
E+ Q + + R RTDKGVSA QV+SL L
Sbjct: 104 ESRQTSNYHRCGRTDKGVSAFGQVISLDL 132
>UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 421
Score = 34.3 bits (75), Expect = 4.4
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Frame = +1
Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE-------------INKRLPETIK 702
E+ + + + R RTDKGVSA QV+SL + + E+ +N+ LP+ I+
Sbjct: 112 ESRETSNYHRCGRTDKGVSAFSQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIR 171
Query: 703 VFAVKRVPNRFIPNLNAMLVHIATLFPRMCLNL 801
F+ + FPR LN+
Sbjct: 172 CFSWSPAHPEMSARFDCKFRSYKYFFPRGNLNI 204
>UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG10837.1 - Gibberella zeae PH-1
Length = 538
Score = 34.3 bits (75), Expect = 4.4
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Frame = +1
Query: 379 TKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGM--QRNPGVQTIXXXXXXXXXXXXYITQ 552
TKP + K + + +A+ L Y G Y G Q +I I
Sbjct: 45 TKPKVKRKMDPNKYTTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFP 104
Query: 553 ED--FENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAV 714
ED + ++ + RTDKGVSA QV+ L++ V + +R+ E + V
Sbjct: 105 EDERIVDFDCCEYSKCGRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVV 160
>UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
Pseudouridylate synthase - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 246
Score = 34.3 bits (75), Expect = 4.4
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 592 SSRTDKGVSAAEQVVSLKLPLEVNVEEI----NKRLPETIKVFAVKRVPNRF 735
+ RTD GV A QVV+ P + V++I N LP I+V + VP+ F
Sbjct: 52 AGRTDAGVHALGQVVNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDF 103
>UniRef50_Q7TU07 Cluster: tRNA pseudouridine synthase A; n=1;
Pirellula sp.|Rep: tRNA pseudouridine synthase A -
Rhodopirellula baltica
Length = 276
Score = 34.3 bits (75), Expect = 4.4
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 592 SSRTDKGVSAAEQVVSLKLPL----EVNVEE-INKRLPETIKVFAVKRVPNRFIPNLNA 753
S RTD GV A QV LP+ V ++ IN +LP I+V AV+ RF P +A
Sbjct: 54 SGRTDAGVHAIGQVARCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADA 112
>UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11;
Bacillaceae|Rep: tRNA pseudouridine synthase A -
Geobacillus kaustophilus
Length = 258
Score = 34.3 bits (75), Expect = 4.4
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Frame = +1
Query: 427 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 606
+++ ++ Y G + G Q PG +T+ + S RTD
Sbjct: 3 QRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRR--------MHKGTKVRVAASGRTD 54
Query: 607 KGVSAAEQVVSLKLPLEVNVEE----INKRLPETIKVFAVKRVPNRFIPNLNA 753
GV A QV+ PL ++ E+ +N +LP+ I V V+ F +A
Sbjct: 55 AGVHAYGQVIHFDTPLSLSSEQWKKALNAQLPDDIVVRFVQEADADFHARFSA 107
>UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32,
partial; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to FKSG32, partial -
Strongylocentrotus purpuratus
Length = 224
Score = 33.9 bits (74), Expect = 5.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 394 EIKKPYE--RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFEN 567
+I +P++ + + +A+ + Y G +Y+G VQ + E+
Sbjct: 50 KIPRPFDFKKYNTRHVALKITYLGWDYHGFV----VQEDSNNTVEHHLFEALTKTKLIES 105
Query: 568 AQNAQFQRSSRTDKGVSAAEQVVSLKL 648
Q + + R RTDKGVSA QV+++ L
Sbjct: 106 RQTSNYSRCGRTDKGVSAFGQVIAIDL 132
>UniRef50_A5N902 Cluster: Predicted transporter protein; n=1;
Clostridium kluyveri DSM 555|Rep: Predicted transporter
protein - Clostridium kluyveri DSM 555
Length = 293
Score = 33.9 bits (74), Expect = 5.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 553 EDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVPNR 732
E F ++ + T G++ + VS EVN+EE+ K P+ + +++ K +
Sbjct: 16 ETFNLGHSSSLSIDNNTAAGITPKIKTVSSPFDKEVNIEELIKSKPDVVVLWSGKEALQK 75
Query: 733 FIPNLNAMLVHIA 771
I LN +V I+
Sbjct: 76 KIEQLNIPVVIIS 88
>UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_2,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 429
Score = 33.9 bits (74), Expect = 5.8
Identities = 24/95 (25%), Positives = 46/95 (48%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 588
++++KR K+ L + + Y ++ PG+Q I TQE+ +N +N Q +
Sbjct: 290 FQKLKRSKLQESLKHK-IHMYNPKQIPGIQKIIESIQTANNTIAKTTQENVQNEENKQ-E 347
Query: 589 RSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPE 693
+S + D V Q V+ + +V E+N+ + E
Sbjct: 348 QSDQGDNAV-IENQNVNQQEDNNNDVNEVNEAVNE 381
>UniRef50_Q6C194 Cluster: Pseudouridylate synthase; n=1; Yarrowia
lipolytica|Rep: Pseudouridylate synthase - Yarrowia
lipolytica (Candida lipolytica)
Length = 443
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNVEE 672
F R RTD+GVSA QV++LK+ +++ EE
Sbjct: 137 FSRCGRTDRGVSAFSQVIALKVRSKLSPEE 166
>UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase
tag-124; n=2; Caenorhabditis|Rep: Probable tRNA
pseudouridine synthase tag-124 - Caenorhabditis elegans
Length = 402
Score = 33.9 bits (74), Expect = 5.8
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 424 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 603
R+K+A+ Y G E+ G+ + P Q ++ E+ F R RT
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL----IEDWTKCDFSRCGRT 84
Query: 604 DKGVSAAEQVVSL 642
DKGVSA +Q ++
Sbjct: 85 DKGVSAFKQTAAM 97
>UniRef50_Q57WP9 Cluster: Pseudouridylate synthase I, putative; n=1;
Trypanosoma brucei|Rep: Pseudouridylate synthase I,
putative - Trypanosoma brucei
Length = 618
Score = 33.5 bits (73), Expect = 7.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +1
Query: 565 NAQNAQFQRSSRTDKGVSAAEQVVSLKLP---LEVN------VEEINKRLPETIKVFAVK 717
+ + F RS RTD+GV A +V L +P LE + +N LP T++V V
Sbjct: 73 SGEEHHFARSCRTDRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVT 132
Query: 718 RVPNRFIP 741
V FIP
Sbjct: 133 TVMGDFIP 140
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,999,088
Number of Sequences: 1657284
Number of extensions: 15450600
Number of successful extensions: 38572
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 37078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38503
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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