Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M09
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    74   2e-14
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    58   2e-09
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    51   3e-07
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    41   3e-04
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.2  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   3.7  

>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
 Frame = +1

Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 591
           E+  ++K+A L+GY G  Y+GMQ NP  +TI             ++  + ++ +     R
Sbjct: 39  EKKPKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALAR 98

Query: 592 SSRTDKGVSAAEQVVSLKLPLEVN--VEEINKRLPETIKVFAVKRVPNRFIP 741
           ++RTDKGV AA  V+SLKL +E    +E++N+ LP +I+++ V R  N F P
Sbjct: 99  AARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNP 150



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 717 KSTKQIHSKSKCNARSYSYTLPTYVFEP 800
           ++    + ++ C +R Y Y +PTY F P
Sbjct: 143 RTINSFNPRTYCESRIYEYMVPTYAFVP 170


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
 Frame = +1

Query: 430 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 609
           ++ +LLGYSG  Y+G+Q N  ++TI            Y+   + + A++    R++RTDK
Sbjct: 40  RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNID-AEHLCIARAARTDK 98

Query: 610 GVSAAEQVVSLKL----PLEVNV--EEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIA 771
           GV     ++SL L    PL++++   E+N+ L   I+V++V   P  F P ++       
Sbjct: 99  GVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYE 158

Query: 772 TLFPRMCL 795
            L P   L
Sbjct: 159 YLIPSFAL 166


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +1

Query: 424 RKKMAM-LLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 600
           RK+M   ++ Y G  + G+Q N  V+TI             + Q + ++ +  +   ++R
Sbjct: 35  RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94

Query: 601 TDKGVSAAEQVVSLKL----PLEVNVEEINKRLPETIKVFAVKRVPNRFIPN 744
           TDKGV A   V+ LK+    PL   V  +N  LP  I+V+ + R  N F P+
Sbjct: 95  TDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPH 146


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 9/174 (5%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYY 471
           K++ +   +I P  L      + A +D  + P  +  +P++  K   +A    Y G  Y 
Sbjct: 47  KNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYN 106

Query: 472 GM--QRNPG-VQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSL 642
           G+  Q  P  + T+             IT     +  +  F R  RTDKGVSA  QV+SL
Sbjct: 107 GLAYQLEPTPLPTVEGKVFEALLRAHLIT-----DPSSCSFSRCGRTDKGVSAMGQVISL 161

Query: 643 KL------PLEVNVEEINKRLPETIKVFAVKRVPNRFIPNLNAMLVHIATLFPR 786
            +      P+ +  + +N+ LP  I++      P  F    +    H   LF +
Sbjct: 162 NVRHSERRPI-IYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTK 214


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 485  FRCIP*YSTPEYPSSIAIFFLLILSYGFLISP 390
            ++C   Y   E+P S+ +FF  I+ + F  SP
Sbjct: 1520 WKCYKAYDITEFPDSLKLFFSDIMGWNFFKSP 1551


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 226 ILFRTAITSARLLSVMEAADVTKDEENKSIDIV 324
           +LFR A  S   L +++ A+   D+EN SID+V
Sbjct: 548 LLFRIAKPSGSFLGILKIANKFDDDEN-SIDVV 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,304
Number of Sequences: 5004
Number of extensions: 70333
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)