Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_M09
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0250 + 27153048-27154453,27154546-27154885 77 1e-14
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 52 6e-07
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 40 0.002
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 30 2.2
07_03_0756 - 21272122-21272784 30 2.9
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 29 6.8
03_02_0575 + 9581220-9581622,9581741-9583035 29 6.8
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 77.4 bits (182), Expect = 1e-14
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 594
R KR+K+A+LLGY G Y GMQ+NPG +TI + + D + + R+
Sbjct: 45 RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104
Query: 595 SRTDKGVSAAEQVVSLKLPLE--VNVEEINKRLPETIKVFAVKRVPNRF 735
+RTDKGVSAA QVVS + ++ V + +N +L I+ F RV N F
Sbjct: 105 ARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSF 153
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 723 TKQIHSKSKCNARSYSYTLPTYVFEPS 803
T ++K C+ R Y Y LP + +PS
Sbjct: 150 TNSFNAKKFCDRRRYVYLLPVFALDPS 176
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 52.0 bits (119), Expect = 6e-07
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Frame = +1
Query: 409 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 579
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 580 QFQRSSRTDKGVSAAEQVVSLKLPLEVNVEE-----------INKRLPETIKVFAV 714
++RSSRTDKGV + ++SLK+ + E IN LP+ ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSV 181
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 40.3 bits (90), Expect = 0.002
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Frame = +1
Query: 415 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 591
R +R ++L Y G + G Q+ PG+ T+ + A++ +
Sbjct: 117 RWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGC 176
Query: 592 ---SSRTDKGVSAAEQVVSL----KLPLEVNVEE-INKRLPETIKVFAVKRVPNRFIPNL 747
+ RTDKGV+A +QV S K ++++ INK P+ ++ V +V F PN
Sbjct: 177 AVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNF 236
Query: 748 NAMLVHIATLFP 783
A +FP
Sbjct: 237 AAKWRRYLYIFP 248
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 583 FQRSSRTDKGVSAAEQVVSLKL 648
+ R RTDKGVSA QV+SL L
Sbjct: 141 YSRCGRTDKGVSATGQVISLFL 162
>07_03_0756 - 21272122-21272784
Length = 220
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 358 GVCCTSLIAYSALYRLTYFLHL 293
GVCC LI + AL+++ FLHL
Sbjct: 187 GVCCFHLIDWLALFQVVRFLHL 208
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 214 LYQDILFRTAITSARLLSVMEAADVTK--DEENKSIDIVPNKLLTRYNKRRAHRDWETKP 387
LY + + R +++ + L + + D+ K +EE+ + V N++ + +K R + + P
Sbjct: 324 LYDEFM-RNGLSTLQKLHIQQRDDIMKILEEESSQLSTVVNEIQDKLSKIRINPEINENP 382
Query: 388 PGEIK 402
GE++
Sbjct: 383 VGEMQ 387
>03_02_0575 + 9581220-9581622,9581741-9583035
Length = 565
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 398 ISPGGLVSQSRCARRLLYLVNSLFGTISIDLFSSSFV--TSAASITDSKRALVMAVLNRM 225
++PG + ++ + + +L+ +F ++++ + + V TS I + +MAV+N++
Sbjct: 411 LTPGQALGEANISHQTAFLIFFVFDSVALFISLAVVVVQTSVVVIERKAKKQMMAVINKL 470
Query: 224 SW*SFVQIT 198
W + V ++
Sbjct: 471 MWVACVLVS 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,786
Number of Sequences: 37544
Number of extensions: 404254
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -