Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M09
         (911 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019320-1|AAH19320.2|  427|Homo sapiens pseudouridylate synthas...    78   5e-14
BC009505-1|AAH09505.2|  427|Homo sapiens pseudouridylate synthas...    78   5e-14
BC002901-1|AAH02901.1|  399|Homo sapiens pseudouridylate synthas...    78   5e-14
AF116238-1|AAD21042.1|  365|Homo sapiens pseudouridine synthase ...    78   5e-14
BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthas...    35   0.47 
AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens ...    35   0.47 
J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.                   32   2.5  
U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.    31   7.7  
U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.    31   7.7  
M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.        31   7.7  
BC092404-1|AAH92404.1|  881|Homo sapiens Rap guanine nucleotide ...    31   7.7  
AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I p...    31   7.7  
AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I p...    31   7.7  

>BC019320-1|AAH19320.2|  427|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 427

 Score = 77.8 bits (183), Expect = 5e-14
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
 Frame = +1

Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
           E+  ++K+ +L+ YSG  Y+GMQRN G    +TI             I +   E+ +   
Sbjct: 79  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138

Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNV-EEINKRLPETIKVFAVKRVPNRF 735
           FQR +RTDKGVSAA QVVSLK+ L  ++ E+IN  LP  I++  +KRV   F
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGF 190



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 723 TKQIHSKSKCNARSYSYTLPTYVF 794
           T   +SK++C+AR+Y Y LPT+ F
Sbjct: 187 TGGFNSKNRCDARTYCYLLPTFAF 210


>BC009505-1|AAH09505.2|  427|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 427

 Score = 77.8 bits (183), Expect = 5e-14
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
 Frame = +1

Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
           E+  ++K+ +L+ YSG  Y+GMQRN G    +TI             I +   E+ +   
Sbjct: 79  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138

Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNV-EEINKRLPETIKVFAVKRVPNRF 735
           FQR +RTDKGVSAA QVVSLK+ L  ++ E+IN  LP  I++  +KRV   F
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGF 190



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 723 TKQIHSKSKCNARSYSYTLPTYVF 794
           T   +SK++C+AR+Y Y LPT+ F
Sbjct: 187 TGGFNSKNRCDARTYCYLLPTFAF 210


>BC002901-1|AAH02901.1|  399|Homo sapiens pseudouridylate synthase 1
           protein.
          Length = 399

 Score = 77.8 bits (183), Expect = 5e-14
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
 Frame = +1

Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
           E+  ++K+ +L+ YSG  Y+GMQRN G    +TI             I +   E+ +   
Sbjct: 51  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 110

Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNV-EEINKRLPETIKVFAVKRVPNRF 735
           FQR +RTDKGVSAA QVVSLK+ L  ++ E+IN  LP  I++  +KRV   F
Sbjct: 111 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGF 162



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 723 TKQIHSKSKCNARSYSYTLPTYVF 794
           T   +SK++C+AR+Y Y LPT+ F
Sbjct: 159 TGGFNSKNRCDARTYCYLLPTFAF 182


>AF116238-1|AAD21042.1|  365|Homo sapiens pseudouridine synthase 1
           protein.
          Length = 365

 Score = 77.8 bits (183), Expect = 5e-14
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
 Frame = +1

Query: 412 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 582
           E+  ++K+ +L+ YSG  Y+GMQRN G    +TI             I +   E+ +   
Sbjct: 17  EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 76

Query: 583 FQRSSRTDKGVSAAEQVVSLKLPLEVNV-EEINKRLPETIKVFAVKRVPNRF 735
           FQR +RTDKGVSAA QVVSLK+ L  ++ E+IN  LP  I++  +KRV   F
Sbjct: 77  FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGF 128



 Score = 32.7 bits (71), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 723 TKQIHSKSKCNARSYSYTLPTYVF 794
           T   +SK++C+AR+Y Y LPT+ F
Sbjct: 125 TGGFNSKNRCDARTYCYLLPTFAF 148


>BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthase 3
           protein.
          Length = 481

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKL 648
           E+ Q + + R  RTDKGVSA  QV+SL L
Sbjct: 104 ESRQTSNYHRCGRTDKGVSAFGQVISLDL 132


>AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31140 fis, clone IMR322001218, highly similar to
           Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
          Length = 481

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 562 ENAQNAQFQRSSRTDKGVSAAEQVVSLKL 648
           E+ Q + + R  RTDKGVSA  QV+SL L
Sbjct: 104 ESRQTSNYHRCGRTDKGVSAFGQVISLDL 132


>J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.
          Length = 765

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++  +D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 140 RDEDD--VDYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 185


>U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++   D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 136 RDEDDA--DYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 181


>U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++   D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 136 RDEDDA--DYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 181


>M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++   D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 140 RDEDDA--DYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 185


>BC092404-1|AAH92404.1|  881|Homo sapiens Rap guanine nucleotide
           exchange factor (GEF) 3 protein.
          Length = 881

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 391 LEVWSPNRD--VPGVCCTSLIAYSALYRLTYFLHLSLRRQLPLRTASVR 251
           L VW PN+D  +PG  C   +     Y +    H  L  QLP+ TASVR
Sbjct: 494 LPVWLPNQDEPLPGSSCAIQVGDKVPYDICRPDHSVLTMQLPV-TASVR 541


>AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++   D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 140 RDEDDA--DYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 185


>AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 292 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 435
           +DE++   D  P K+ T   K+   R  E +  G++KKP  + K KK+
Sbjct: 140 RDEDDA--DYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKV 185


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,282,366
Number of Sequences: 237096
Number of extensions: 2464811
Number of successful extensions: 4789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4781
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)