Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M09
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 744 SKCNARSYSYTLPTYVFEPSLVXMKRERLXDTAEKXKVNSXWGLXGP 884
           S C  R+Y   + +YV   ++V    ER        +V +  GL  P
Sbjct: 112 SLCKIRAYVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTISGLKRP 158


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 240 CSKQDVLVKFCSNYLQTI*LMILTYLKHY*LIS*NK*I---FVMQRVVE 103
           C K D ++ F    LQT  +   TYL      S  K I   F M R+++
Sbjct: 276 CRKTDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSAFDMARIIQ 324


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 240 CSKQDVLVKFCSNYLQTI*LMILTYLKHY*LIS*NK*I---FVMQRVVE 103
           C K D ++ F    LQT  +   TYL      S  K I   F M R+++
Sbjct: 314 CRKTDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSAFDMARIIQ 362


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 421 KRKKMAMLLGYSGVEYYGMQRNPGVQTI 504
           ++KK   L+G  G+   G+Q N   +TI
Sbjct: 92  QKKKKRSLMGAQGLSIRGLQINHEDETI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,455
Number of Sequences: 438
Number of extensions: 4925
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)