Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M06
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    29   0.69 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.7  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 859 NSRADSV*WRRHTXPCSRHSVVVWRLFVASSPRLALILRE---WDRRSDVYQSK 707
           ++R  ++ WR H+ PC + S+++       S    LI R+    D R+  YQS+
Sbjct: 84  SNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISRDSDCIDYRAMFYQSR 137


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 563 STGWVWLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGL 709
           S  W+ +   RN  D+  WR ++        R    CN LLGS K+  L
Sbjct: 53  SLRWIAIIQLRNSIDI-IWRKNTKMSLLPEERDFIRCNALLGSIKSENL 100


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 224 TETIALXSRYTSILSAVFTSTPFTTTN 304
           T T    S YT   S   TSTP TTTN
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 224 TETIALXSRYTSILSAVFTSTPFTTTN 304
           T T    S YT   S   TSTP TTTN
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTN 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,603
Number of Sequences: 5004
Number of extensions: 70967
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)