Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_M06
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 31 1.7
12_01_0317 + 2417147-2417587,2417622-2418134 29 5.1
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 29 5.1
04_01_0179 + 2021977-2024890,2025117-2025610 29 5.1
03_05_0627 - 26240673-26241318,26241713-26242536 29 5.1
07_03_0058 - 12891692-12891727,12891807-12892095,12892111-128921... 29 6.7
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 6.7
06_01_0814 - 6163155-6163591,6163729-6164038 28 8.9
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -2
Query: 496 LMTCLLHTYSSKSHRICCKYTSRSDVTPHCANVFLNFTCRVSQCYTGRAFTTAALMSTTI 317
L+ LLH H + Y DV HCA L V+QC+ +FT ++ I
Sbjct: 469 LLLLLLHY----DHLVLVDYLISKDVGVHCAQYLLRCLRLVTQCW--HSFTDDSIYEAKI 522
Query: 316 EENFIRRSK 290
E+ +R K
Sbjct: 523 EKLNFKRQK 531
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 656 AAQMSSAPATMHATPTYRTGSA*SSARPSQLISAPAHNNTMPYL 525
+A + + P+T+ T +YR A SS+ P QL AH+ P L
Sbjct: 38 SAAVQAQPSTLSVTASYRVALASSSSPPLQLRLTWAHSPLGPTL 81
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +1
Query: 487 MSLDEGRQSQRPYRYGMVL-LCAGALINWLGLAEDY---AEPVRYVGVACIVAGALLICA 654
M DEG + + + +G L A A G+AEDY PVR GV+C AL+
Sbjct: 31 MEDDEGDEQEEHHHHGAKLRTTAEAPPYGHGVAEDYWWRDVPVRLPGVSCGAVLALVDYE 90
Query: 655 AMCCWLQSPA 684
A W S A
Sbjct: 91 ATPAWWSSRA 100
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 578 WLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGLRLIHIRSTIP 739
WL TT R W+ ASSP +S GC+ GS + + +H+ + +P
Sbjct: 31 WLNTTAARPPDWSPSASSPCKWSH-----VGCDAATGSVTSVTFQSVHLAAPLP 79
>03_05_0627 - 26240673-26241318,26241713-26242536
Length = 489
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 430 RSDVTP-HCANVFLNFTCRVSQCYTGRAFTTAALMSTTIEENFI 302
R+D+ P A FLNF+C Y R TT +TT + I
Sbjct: 68 RADLLPLSLAGFFLNFSCHDYSEYFSRPTTTTTTTTTTCHRHLI 111
>07_03_0058 -
12891692-12891727,12891807-12892095,12892111-12892193,
12895925-12895991,12896230-12896504
Length = 249
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 610 HIAPVPRSLQPDPAS-*LALPHITTPCHTCMAFVIVCLRLMTCLLHTYSSKSHRICCKYT 434
HI+P P +Q D +S A P +++P H M V ++L+ H + +++ C +
Sbjct: 60 HISPSPSWIQTDKSSDKAATPDLSSP-HANMQSWSVQIKLLYIFGHAETEETYS-CHDFE 117
Query: 433 SRSDVTPHCANVFLNFTCRVSQCYTG 356
+ +D P NFT + G
Sbjct: 118 ADADSKPMTTPGLPNFTVNIKALKLG 143
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 634 RRRCTPRPHIAPVPRSLQPDP 572
R PRPH++P+P +L DP
Sbjct: 119 RPTARPRPHVSPLPCALHADP 139
>06_01_0814 - 6163155-6163591,6163729-6164038
Length = 248
Score = 28.3 bits (60), Expect = 8.9
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 58 ARGRPNRQHASPSDAPITSIAVTLQTSTNRRRLYYNDDH--FRY*LVDSRSLSSLQRY-- 225
A GRP + S P+T+ A T+ RRLY + RY +VD S Y
Sbjct: 28 ATGRPVAAAPAASGKPVTAPAAATATNAASRRLYNTEGAPLRRYDVVDESGTDSGDEYDA 87
Query: 226 RDD--RLXEPLY 255
DD RL P +
Sbjct: 88 TDDGRRLTVPFF 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,470,697
Number of Sequences: 37544
Number of extensions: 586131
Number of successful extensions: 1707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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