Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   8.1  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 379 VSSXXIMAAIXXXHYRLTKIWCYHPDXFQXIXFPFYSV 492
           +S+  IM  +   H+ L + W + P+  +   FP + V
Sbjct: 369 LSACAIMKRVYFRHFNLRERWLHAPEKIKRCSFPIHGV 406


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 153 TTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRYLIFPLF 269
           T D+  + +  +   D   HN AE    DDD YL+  LF
Sbjct: 387 TDDSSKDDDNNSESNDMSPHNDAETRA-DDDAYLMGDLF 424


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -3

Query: 277 KTQNKGKIKYLSSSRPGASALL*SCESPPPFSAFPLSWLSVVISCAKLSLLAMTKITPXX 98
           K Q   +I+ ++     +S    S  +P   S+ P S   ++ S  +L LL  ++ TP  
Sbjct: 434 KRQENAEIRNITPGLTDSSVHS-SSATPQSESSSPNSVSPLLPSSDRLPLLRQSQFTPPP 492

Query: 97  XX*TKTMVYTRPSNNESNLKEFPIVXSV 14
                 +    P  ++  L   P+V SV
Sbjct: 493 KKPNFEVAIISPKKSQHKLYPNPVVESV 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,571
Number of Sequences: 5004
Number of extensions: 47077
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)