Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M04
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 144 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 248
           Q+    N  N NA N   D+Q+ N      ++D+R
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNR 464



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 DNQLNGNAENGGGDSQDHNSAEAPGRDDDR 248
           DN+ NGN +N  G+ Q+ N      ++D++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNK 514



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 159 DNQLNGNAENGGGDSQDHNS 218
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 162 NQLNGNAENGGGDSQDHNSAEAPGRDDDR 248
           N  N NA+N   D+Q+ N+  A  ++ ++
Sbjct: 426 NAGNQNADNQNADNQNANNQNADNQNANK 454


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 126 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRY 251
           N +  A +   +N  N N  NG  D+ + N A     + D +
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMF 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,047
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)