Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_M02
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 252 5e-68
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 64 2e-11
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 32 0.13
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 27 3.7
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 6.4
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 6.4
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 6.4
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 8.5
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 8.5
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 26 8.5
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 252 bits (617), Expect = 5e-68
Identities = 121/215 (56%), Positives = 154/215 (71%), Gaps = 5/215 (2%)
Frame = +1
Query: 127 KMVVAIGFEGSANKLGIGIVK-----DGEILANCRRTYITPPGEGFLPRETAEHHQQNIH 291
K ++A+G EGSANKLG+GI+ +ILAN R TYITPPG+GFLP +TA+HH+ I
Sbjct: 3 KPLIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAWII 62
Query: 292 EVLQEALDQSGLNPDEIDVVCYTKGPGMGAPLMVCAIVARTCAKLWKKPIYGVNHCIGHI 471
++++A ++ ++ +ID +C+TKGPG+GAPL A+ AR + + KKP+ VNHCIGHI
Sbjct: 63 PLIKQAFAEAKISFKDIDCICFTKGPGIGAPLNSVALCARMLSLIHKKPLVAVNHCIGHI 122
Query: 472 EMGRLITKANNPTVLYVSGGNTQIIAYSRKRYRIFGETIDIAVGNCLDRFAXVLKLSNAP 651
EMGR IT A NP VLYVSGGNTQ+IAYS K+YRIFGET+DIA+GNCLDRFA ++ LSNAP
Sbjct: 123 EMGREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGETLDIAIGNCLDRFARIIGLSNAP 182
Query: 652 SPGYNIXQAAXXXXXXXXXXXXC*RNGRKFSGILS 756
SPGYNI Q A FSG+LS
Sbjct: 183 SPGYNIMQEAKKGKRFIELPYTVKGMDCSFSGLLS 217
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 64.5 bits (150), Expect = 2e-11
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Frame = +1
Query: 244 GFLPRETAEHHQQNIHEVLQEAL-DQSGLNPDEIDVVCYTKGPGMGAPLMVCAIVARTCA 420
G P HQ+N+ +V+Q + D + + D++ T+GPGM PL V A+ A
Sbjct: 86 GIHPTIVIHEHQKNLAKVIQRTISDAARSGITDFDLIAVTRGPGMIGPLAVGLNTAKGLA 145
Query: 421 KLWKKPIYGVNHCIGHIEMGRLITKANNPTV-LYVSGGNTQII-AYSRKRYRIFGETIDI 594
+KP+ V+H H +L + P + + VSGG+T ++ + S + I T DI
Sbjct: 146 VGLQKPLLAVHHMQAHALAVQLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDI 205
Query: 595 AVGNCLDRFAXVL 633
AVG+ LD+ A L
Sbjct: 206 AVGDYLDKCAKYL 218
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 583 FHQIS-CIFFLNML*FVYSLHSHIALLDYLLWLSTFPF--LYVQYND 452
F QIS FFL ++ S I L + LLWLS+FPF LYV + +
Sbjct: 50 FLQISNASFFLPACFYLLGSSSIIQLYEPLLWLSSFPFCILYVGFGE 96
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +1
Query: 508 TVLYVSGGNTQIIAYSRKRYRIFGETIDIAVG-NCLD-----RFAXVLKLSNAPSPGYNI 669
+V V QI+ S ++ R F ET+++ +G D RF+ +KL N P P I
Sbjct: 5 SVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAI 64
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 378 PHTRSFGITDNVNFIWIETRLVQSFLQYF 292
P R FG+TDN N I + V FL YF
Sbjct: 114 PSIRLFGVTDNGNSILVH---VVGFLPYF 139
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 389 WCVQLLPEHVLNY 427
WCVQL+P+ + NY
Sbjct: 30 WCVQLIPQIIKNY 42
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 418 AKLWKKPIYGVNHCIGHIEMGRLITKANNPTVLYVSGGN--TQIIAYSRKRYRI 573
+K WKK YG+ I G LI V Y+ GN T + A SR +Y++
Sbjct: 58 SKYWKKCTYGIREYCKFIGPGFLI------AVAYIDPGNYSTDLDAGSRFQYKL 105
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 351 LLYQRTWYGGAIDGVCN 401
LL+ +++Y G +DG+CN
Sbjct: 816 LLFSQSFYQGILDGLCN 832
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 584 VSPNILYLFLEYAIICVFPPLTYSTVGLFALVI 486
+ PN ++ FL ++ VFP L + +F +++
Sbjct: 338 LKPNQVFAFLRSILVRVFPKLIWGNQRIFEIIL 370
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 541 IIAYSRKRYRIFGETIDIAVG-NCLD-----RFAXVLKLSNAPSPGYNI 669
I+ S ++ R F ET+++ +G D RF+ +KL N P P +I
Sbjct: 16 ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSI 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,239
Number of Sequences: 5004
Number of extensions: 79062
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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