Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_M02
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...   275   3e-74
Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...    63   3e-10
U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine rece...    30   2.6  
U50191-4|AAK31553.1|  194|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    28   8.0  

>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score =  275 bits (674), Expect = 3e-74
 Identities = 129/186 (69%), Positives = 152/186 (81%), Gaps = 2/186 (1%)
 Frame = +1

Query: 130 MVVAIGFEGSANKLGIGIVKDGEILANCRRTYITPPGEGFLPRETAEHHQQNIHEVLQEA 309
           MV  IG EGSANK+G+GI++DG +L+N R T+  PPGEGF P ETA+HH+Q I  ++ EA
Sbjct: 1   MVCVIGIEGSANKIGVGIIRDGVVLSNPRATFHAPPGEGFRPTETAQHHRQQIVRLVGEA 60

Query: 310 LDQSGL-NPD-EIDVVCYTKGPGMGAPLMVCAIVARTCAKLWKKPIYGVNHCIGHIEMGR 483
           +  + + NP+ EID + YTKGPGMGAPL V AIVART +  WKKPI  VNHC+GHIEMGR
Sbjct: 61  IKLANIQNPELEIDGIAYTKGPGMGAPLQVGAIVARTLSLTWKKPIIPVNHCVGHIEMGR 120

Query: 484 LITKANNPTVLYVSGGNTQIIAYSRKRYRIFGETIDIAVGNCLDRFAXVLKLSNAPSPGY 663
           LIT A+NP VLYVSGGNTQ+I+Y++KRYRIFGETIDIAVGNCLDRFA VLKL NAPSPGY
Sbjct: 121 LITGADNPVVLYVSGGNTQVISYTKKRYRIFGETIDIAVGNCLDRFARVLKLPNAPSPGY 180

Query: 664 NIXQAA 681
           NI Q A
Sbjct: 181 NIEQLA 186


>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
 Frame = +1

Query: 133 VVAIGFEGSANKLGIGIVKDG-EILANCRRTY--ITPPGEGFLPRETAEHHQQNIHEVLQ 303
           V  +G E S +   + IV +  EIL++ R T   I     G  P   A  H++N+  +++
Sbjct: 23  VKVLGIETSCDDTAVAIVNEKREILSSERYTERAIQRQQGGINPSVCALQHRENLPRLIE 82

Query: 304 EALDQSGLNPDEIDVVCYTKGPGMGAPLMVCAIVARTCAKLWKKPIYGVNHCIGHIEMGR 483
           + L+ +G +P ++D V  T  PG+   L      A   AK  + P+  V+H   H     
Sbjct: 83  KCLNDAGTSPKDLDAVAVTVTPGLVIALKEGISAAIGFAKKHRLPLIPVHHMRAHALSIL 142

Query: 484 LI-TKANNP-TVLYVSGGNTQI-IAYSRKRYRIFGETIDIAVGNCLDRFAXVL 633
           L+      P + + +SGG+  I +A   ++++++G+++  + G C+D+ A  L
Sbjct: 143 LVDDSVRFPFSAVLLSGGHALISVAEDVEKFKLYGQSVSGSPGECIDKVARQL 195


>U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein193 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 541 FVYSLHSHIALLDYLLWLSTFPFLYV 464
           ++++LHS I + DY L L T PFL +
Sbjct: 54  YLFALHSWIVVFDYSLSLLTVPFLLI 79


>U50191-4|AAK31553.1|  194|Caenorhabditis elegans Hypothetical
           protein T14B4.5 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -3

Query: 321 RLVQSFLQYFMNVLLMMLRSFSRKKPFTGWGYVRSSA-IGQDFSIFNYTN-SQFVCTSLK 148
           R +QS L     V++++ + F++K   T W    +SA +G            Q + +SL 
Sbjct: 88  RTIQSVLIVLAVVMVLLAQGFTQKPGKTTWQLFNTSAVVGLICGFIRPVQMQQRLFSSLH 147

Query: 147 S--YCYYHFYSIQF 112
              YCY+ F+ I F
Sbjct: 148 EGFYCYFMFFIISF 161


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 541 FVYSLHSHIALLDYLLWLSTFPFLYV 464
           ++++LH+ I L DY L L T PF+ V
Sbjct: 52  YMFTLHTWILLFDYSLSLLTAPFVLV 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,141
Number of Sequences: 27780
Number of extensions: 440702
Number of successful extensions: 1196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)