Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L24
(1110 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 31 1.9
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 25 2.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 25 2.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 25 2.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 4.5
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 4.5
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 4.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 7.9
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.9
Identities = 33/138 (23%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Frame = +3
Query: 372 PACXGXPRSXHPAKGXHAP-PQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAP 548
P G P+ +G + P K TP P + PP P
Sbjct: 76 PPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPP----P 131
Query: 549 XGXXXPXPXXPPTGPPXRHXXPKNXXKXXXAXXX*--NXPXPXTXQXRXTHTXXRADLPK 722
G P P PPTG P N + + P P T + + T A
Sbjct: 132 KGTGSPPP--PPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRP 189
Query: 723 XPXPXXXPPXTPPPTXXP 776
P P PPPT P
Sbjct: 190 PPPPKGTGTPPPPPTGEP 207
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +3
Query: 546 PXGXXXPXPXXPPTGPPXRHXXPKNXXKXXXAXXX*NX--PXPXTXQXRXTHTXXRADLP 719
P G P P PPTG P N + P P T + + A
Sbjct: 162 PKGTGSPPP--PPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRR 219
Query: 720 KXPXPXXXPPXTPPPTXXP 776
P P TPPPT P
Sbjct: 220 PPPPPKGTGSPTPPPTGEP 238
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 30.3 bits (65), Expect = 2.6
Identities = 21/80 (26%), Positives = 23/80 (28%)
Frame = +3
Query: 525 PPXXTHAPXGXXXPXPXXPPTGPPXRHXXPKNXXKXXXAXXX*NXPXPXTXQXRXTHTXX 704
PP T AP P P T P A N P P + T
Sbjct: 192 PPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAP-NPPAPENTTAKVETTKP 250
Query: 705 RADLPKXPXPXXXPPXTPPP 764
P P P P +PPP
Sbjct: 251 TKAAPPAPTPVPNPVPSPPP 270
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/75 (29%), Positives = 27/75 (36%)
Frame = +3
Query: 369 RPACXGXPRSXHPAKGXHAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAP 548
+P G P +P KG AP + + P P PA GP +P
Sbjct: 121 KPGAPGAP--GNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPP--GPDGNPGSP 176
Query: 549 XGXXXPXPXXPPTGP 593
G P P PP GP
Sbjct: 177 AGPSGPGPAGPP-GP 190
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/75 (29%), Positives = 27/75 (36%)
Frame = +3
Query: 369 RPACXGXPRSXHPAKGXHAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAP 548
+P G P +P KG AP + + P P PA GP +P
Sbjct: 121 KPGAPGAP--GNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPP--GPDGNPGSP 176
Query: 549 XGXXXPXPXXPPTGP 593
G P P PP GP
Sbjct: 177 AGPSGPGPAGPP-GP 190
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/75 (29%), Positives = 27/75 (36%)
Frame = +3
Query: 369 RPACXGXPRSXHPAKGXHAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAP 548
+P G P +P KG AP + + P P PA GP +P
Sbjct: 121 KPGAPGAP--GNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPP--GPDGNPGSP 176
Query: 549 XGXXXPXPXXPPTGP 593
G P P PP GP
Sbjct: 177 AGPSGPGPAGPP-GP 190
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/75 (29%), Positives = 27/75 (36%)
Frame = +3
Query: 369 RPACXGXPRSXHPAKGXHAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAP 548
+P G P +P KG AP + + P P PA GP +P
Sbjct: 121 KPGAPGAP--GNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPP--GPDGNPGSP 176
Query: 549 XGXXXPXPXXPPTGP 593
G P P PP GP
Sbjct: 177 AGPSGPGPAGPP-GP 190
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 519 GGPPXXTHAPXGXXXPXPXXPPTGPP 596
GGPP P P P PP G P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLP 736
Score = 23.4 bits (48), Expect(2) = 2.9
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 717 PKXPXPXXXPPXTPPP 764
P P P PP PPP
Sbjct: 760 PPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 519 GGPPXXTHAPXGXXXPXPXXPPTGPP 596
GGPP P P P PP G P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLP 736
Score = 23.4 bits (48), Expect(2) = 2.9
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 717 PKXPXPXXXPPXTPPP 764
P P P PP PPP
Sbjct: 760 PPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 519 GGPPXXTHAPXGXXXPXPXXPPTGPP 596
GGPP P P P PP G P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLP 319
Score = 23.4 bits (48), Expect(2) = 2.9
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 717 PKXPXPXXXPPXTPPP 764
P P P PP PPP
Sbjct: 343 PPPPPPGGCPPPPPPP 358
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = +3
Query: 420 HAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXPPTGP 593
HAPP P P G PP P G P P PP P
Sbjct: 199 HAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = +3
Query: 420 HAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXPPTGP 593
HAPP P P G PP P G P P PP P
Sbjct: 185 HAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = +3
Query: 420 HAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXPPTGP 593
HAPP P P G PP P G P P PP P
Sbjct: 185 HAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Frame = +3
Query: 450 PRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXP-----PTGPP 596
P TP + P D GPP AP P P P P GPP
Sbjct: 206 PGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPP 259
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Frame = +3
Query: 450 PRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXP-----PTGPP 596
P TP + P D GPP AP P P P P GPP
Sbjct: 201 PGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPP 254
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Frame = +3
Query: 450 PRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPXPXXP-----PTGPP 596
P TP + P D GPP AP P P P P GPP
Sbjct: 201 PGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPP 254
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/67 (25%), Positives = 20/67 (29%)
Frame = +3
Query: 390 PRSXHPAKGXHAPPQKXXKNPRTPXXXDXXXPAXXXXXXDXXXGGPPXXTHAPXGXXXPX 569
P P +G APPQ + P GGPP + G P
Sbjct: 322 PPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPP 381
Query: 570 PXXPPTG 590
P P G
Sbjct: 382 PQSGPPG 388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,645
Number of Sequences: 27780
Number of extensions: 142819
Number of successful extensions: 976
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 3002662306
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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