Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L19
(1045 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 35 0.093
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.1
12_02_1174 - 26696869-26698191 30 3.5
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 30 3.5
11_01_0066 - 536281-537196,537397-537452 29 6.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.1
05_07_0031 - 27183252-27183317,27183542-27184282 29 8.1
01_05_0490 + 22672241-22674679 29 8.1
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 35.1 bits (77), Expect = 0.093
Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Frame = +1
Query: 595 PXPPPPXXLP-XXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTL-XTXXPPPXLPXQ 768
P PPPP LP P P P P A P L L PPP P +
Sbjct: 204 PPPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPR 263
Query: 769 EXXSGXXXXAXPXPXXP 819
E G P P P
Sbjct: 264 EIVPGQTLLPPPPPPRP 280
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Frame = +1
Query: 595 PXPPPPXXLPXX-WXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXTXXPPPXLPXQE 771
P PPPP LP + + P P P P P + PPP P
Sbjct: 567 PPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPP 626
Query: 772 XXSGXXXXAXPXPXXP 819
+ P P P
Sbjct: 627 LPNHSVLPPPPPPPPP 642
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Frame = +1
Query: 574 SXLQYXXPXPPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXT----- 738
S L P PPPP P G P P P + P +
Sbjct: 631 SVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPP 690
Query: 739 XXPPPXLPXQEXXSGXXXXAXPXPXXP 819
PPP LP +G + P P P
Sbjct: 691 PPPPPPLPPANRTNGPGVPSAPPPPPP 717
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +1
Query: 595 PXPPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXTXXPPPXLP 762
P P PP P KP P P P P P + PPP LP
Sbjct: 163 PPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVK-PPVVQPKPQPPPTLP 217
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/87 (25%), Positives = 27/87 (31%)
Frame = +1
Query: 559 YSXIXSXLQYXXPXPPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXT 738
+ + S + P PPPP P A P P P P +S L+
Sbjct: 24 FKPLSSAAPFRRPSPPPPPPSPVPSPAPP------PPPHRPSPSPPPNPLSSKLWLSSKL 77
Query: 739 XXPPPXLPXQEXXSGXXXXAXPXPXXP 819
PPP Q S P P P
Sbjct: 78 SPPPPETLEQPEPSTTTTTTTPPPPEP 104
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +1
Query: 601 PPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXTXXPPPXLP 762
PPP P A P P P + P + T PPP LP
Sbjct: 216 PPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPLP 269
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 6.1
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +1
Query: 601 PPPPXXLPXXWXAKPXTXXGEAXPXP-XXXXPXXXPXASXPXLTLXTXXPPPXLPXQEXX 777
PPPP LP A T G P P P P A P PPP P
Sbjct: 302 PPPPHPLPPGAGAGAGT--GAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPA 359
Query: 778 SGXXXXAXPXPXXP 819
+ P P P
Sbjct: 360 APRPPGPGPGPPPP 373
>05_07_0031 - 27183252-27183317,27183542-27184282
Length = 268
Score = 28.7 bits (61), Expect = 8.1
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 595 PXPPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXP 705
P PPPP P KP + EA P P P
Sbjct: 118 PPPPPPPPPPPTTTTKPESLPAEADSEPELKAPPPPP 154
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/56 (26%), Positives = 18/56 (32%)
Frame = +1
Query: 595 PXPPPPXXLPXXWXAKPXTXXGEAXPXPXXXXPXXXPXASXPXLTLXTXXPPPXLP 762
P PPPP +P + P P P P + T P P LP
Sbjct: 642 PPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLP 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,504
Number of Sequences: 37544
Number of extensions: 130445
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3082779744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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