Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L18
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 36 0.011
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 31 0.31
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 29 0.71
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 29 0.93
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 3.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 5.0
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.6
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 6.6
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 8.7
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 8.7
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 35.5 bits (78), Expect = 0.011
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = +3
Query: 312 PKINTPV-LELSPRVLRKRKSLMPEKSKPS-NRRVNMKPRKHVVAENANPKQIEALYLNK 485
PK+N + + +LRKRK+ PE+ +P+ ++R + AE +P++I A L
Sbjct: 422 PKVNELLQADFKQAILRKRKNESPEEVEPAKHQRTDTSTENQETAEVLDPEEIAAAELAN 481
Query: 486 TVKSLSQTL--ETIYEEPKAESGDTEAVIG 569
++ TL ET+ +P+ E+ + + +G
Sbjct: 482 ITEAAIATLPQETVV-QPEGEAPELGSPMG 510
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 252 TRTPLSSVPCFFSVIYQFNSSLWFHDRSQKA*ISTALFIQ 133
TR SS+P FFS +YQ SL+ A F+Q
Sbjct: 1415 TRGAFSSIPIFFSALYQSVRSLFIRSTPTNGEFENAAFLQ 1454
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 159 TPFASDRGTIMKN*IDI*R*KNMEHSRVECELPTKMAHLDI-MEVDELNTDVPKI 320
TP +S R +N +D + HS LP K+AH + +EV E N V +I
Sbjct: 138 TPNSSSRSLFPQNGVDTTTSRQKLHSSGRFPLPAKLAHRSVEVEVAESNALVSRI 192
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 354 LRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPK 458
L +RK++MP+K K + + N +P K N N K
Sbjct: 282 LFRRKTIMPKKDKKPSHKSNGRPNKLTAFFNKNSK 316
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 357 RKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKS 497
RK+++ K +P +RVN + +E NP + +YLN+ VK+
Sbjct: 531 RKKRNEDSWKRRPPAKRVNYQKFGDNFSEIGNPFCCDWVYLNEMVKA 577
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 3.8
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +3
Query: 321 NTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSL 500
N P SP + + + ++K + PR + + NAN + A N T+K++
Sbjct: 743 NKPAALKSPLIKKNIQQAELAQNKQQSSVTTASPRSNAL--NANTPKAAAPSSNVTMKNV 800
Query: 501 SQTLETIYEEPKAESGDTEAVIG 569
+ LET E DT +V+G
Sbjct: 801 TSILET----STFEGEDTWSVVG 819
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 601 WNVSSLFILRAPITASVSPLSALGSSYIVSN 509
WNVS +L AP +PL + +++++N
Sbjct: 1323 WNVSPNIVLYAPKRFQNAPLKQMALNFVIAN 1353
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 6.6
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Frame = +3
Query: 315 KINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMK---PRKHVVAENANPKQIEALYLNK 485
K T LE +PR L KRK L S R N K E ++ + IE L++
Sbjct: 36 KHKTAKLE-APRALIKRKQLSHSTSSDITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHE 94
Query: 486 TVKSLSQTLETIYEEPKAESGDTEAVIGARKIKRLL 593
+++ T + E+ K GD R + R L
Sbjct: 95 KLRNGQITTKEYSEKSKELGGDLNTTHLVRGLDRKL 130
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 338 FKNRCVNFRNICVQL--VHFHYI*MCHFSW*LALHSRVFHVFSASY 207
F R + ++CV L + F MCHF+W AL V F +++
Sbjct: 68 FHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVDSFFPSNF 113
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 444 NANPKQIEALYLNKTVKSLSQTLETIYEEPKAESGDTEA 560
N P I L + L TLETIY E K EA
Sbjct: 697 NTTPSSISKLSIQPPTFQLFSTLETIYLELKDSMPPNEA 735
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 348 RVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNK 485
R LR+RKSL+ + K + +N + +V E A K+ +L LN+
Sbjct: 224 RSLRRRKSLLSRQVKADDAVINYQDGSPIV-EKAYLKRHRSLRLNE 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,303
Number of Sequences: 5004
Number of extensions: 67274
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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