Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_L17
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.68 
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    29   1.2  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +1

Query: 460 SLVTYNIFIAVYLHVV*VKFIVICQSILVXAWLAKSRVSSLV 585
           S++TY  F+A++LHVV    + I  + L+  WL K   S+LV
Sbjct: 79  SIITY--FLALFLHVVEQPTLRIPMASLLMFWLFKFLASALV 118


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 180 GRATSLDAAGRRTGPTRPQP 121
           GR  +LDA GRR  P +P+P
Sbjct: 40  GRKPALDALGRRKAPIKPRP 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,438
Number of Sequences: 5004
Number of extensions: 50476
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)