Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_L14
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    52   1e-07
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    29   0.96 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   1.3  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    29   1.3  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   1.3  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   2.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   9.0  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   9.0  

>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = +3

Query: 216 NKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFE 395
           + L + C+ C S + + K  + + +    P M    +++ +   ET  +F+ +++ + F+
Sbjct: 2   SNLRIVCQHCPSVVFNNKRPDVVKR----PTMSAMLHSETQEDLET-DDFFLLKDPFAFD 56

Query: 396 NIGFTHTV-DNHKYLSCADCDAGPVGYHDT 482
           N+  +  + +N+K L+CADC+ GP+GY+D+
Sbjct: 57  NVSVSKPLANNYKLLACADCEKGPLGYYDS 86


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 138 QYIMAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 317
           Q  ++E   D  P+  +     E  +N +     +C SK+LD    NYI  +   P +++
Sbjct: 328 QVFLSEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQ---PGIRR 384

Query: 318 ASNNDREV 341
             NN RE+
Sbjct: 385 QVNNLREL 392


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 269 FLIQNFRTAKFALHYEFVFSVFNIFPLL-RFDWRYIIFHF----SHYVLLINYFYTYNLK 105
           FL+    T  +  +  F       F ++ R  W+YIIF F     +Y +++ Y YT  L 
Sbjct: 177 FLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLS 236

Query: 104 AS 99
           AS
Sbjct: 237 AS 238


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 229 CNANFAVRKFWIRNHLIISLKRKIC 303
           C AN+  RKF +R+ +   + RKIC
Sbjct: 165 CTANYVARKFGVRSAMPEFIARKIC 189


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 200 IFPLLRFDWRYIIFHFSHYVLLIN 129
           I+PL +  ++YIIFH++  +L IN
Sbjct: 311 IYPLSKSSFQYIIFHYAAGLLFIN 334


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 201 VEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQ-QASNNDREVQNETIKEFYHV 374
           V  G N L     F G   L +     I+  +D   +Q  A NND  +++E I+  YHV
Sbjct: 180 VSMGINLLWGIITFIGISFLPESPRYLISVGRDEEALQIMAKNNDLPIEHEVIQTEYHV 238


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 161 FHFSHYVLLINYFYTYNLKASSFVMEKINKLLFY*ISWGKILRIP 27
           F F  +  L++  YTYN+   S   + I   ++  ++W    +IP
Sbjct: 452 FPFEEFYYLLSSIYTYNVSWISDFWDDIESDMYGFLTWSMGSQIP 496


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +1

Query: 151 LKWKMMYRQSKRSKGNMLKTEKTNS*CNANFAVRKFWIRNHL----IISLKRKICHLCSK 318
           L W +  R SK+   N + T K  S   A F    FWI N         + R +C    +
Sbjct: 315 LFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVE 374

Query: 319 PVTTIEKYRTR 351
            V  I++Y  +
Sbjct: 375 SVNLIDQYTAK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,323
Number of Sequences: 5004
Number of extensions: 61011
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)