Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_L12
         (1025 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    42   2e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 28/113 (24%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
 Frame = +3

Query: 597 PKSXPPXGXXXPPXXXXXPXXXTPXPPXPTSXXPXIXXXADXXXXXQAXXXXXXAXXRPX 776
           P S PP     PP     P   +  PP P+S  P     A       A          P 
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199

Query: 777 RTPXPXXEXHXPXPXXSXLPK--GPPXSXPPXLXTXXPKTARQNPKXP*XAXP 929
           + P P      P    S  P    PP    P + +  PK   + P  P  + P
Sbjct: 200 KVPPPPLS-QAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVP 251



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +3

Query: 522 PXTPXKARPAXGXXXRATXXPSXXXPKSXPPXGXXXPPXXXXXPXXXTPXPP 677
           P +P  A P      +A   PS   P + P      PP     P    P PP
Sbjct: 151 PPSPASAPPIPS---KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 780  TPXPXXEXHXPXPXXSXLPKGPPXSXPPXL 869
            TP P      P P    +P GPP + PP L
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 27/134 (20%), Positives = 33/134 (24%), Gaps = 3/134 (2%)
 Frame = +3

Query: 522 PXTPXKARPAXGXXX-RATXXPSXXXPKSXPPXGXXXPPXXXXXPXXXTPXPPXPTSXXP 698
           P    + +P  G     ++  P    P+S        PP     P    P     T   P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376

Query: 699 XIXXXADXXXXXQAXXXXXXAXXRPXRTPXPXXEXHX--PXPXXSXLPKGPPXSXPPXLX 872
                +       A          P   P          P P    LP   P S PP   
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436

Query: 873 TXXPKTARQNPKXP 914
              P  A   P  P
Sbjct: 437 PSLPMGAPAAPPLP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,523
Number of Sequences: 5004
Number of extensions: 16057
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)