Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L12
(1025 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 7.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 7.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 7.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 9.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 9.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/87 (22%), Positives = 21/87 (24%)
Frame = +3
Query: 609 PPXGXXXPPXXXXXPXXXTPXPPXPTSXXPXIXXXADXXXXXQAXXXXXXAXXRPXRTPX 788
PP PP P P PP P P I P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI-TGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 789 PXXEXHXPXPXXSXLPKGPPXSXPPXL 869
P P GPP PP +
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGM 792
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/87 (22%), Positives = 21/87 (24%)
Frame = +3
Query: 609 PPXGXXXPPXXXXXPXXXTPXPPXPTSXXPXIXXXADXXXXXQAXXXXXXAXXRPXRTPX 788
PP PP P P PP P P I P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI-TGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 789 PXXEXHXPXPXXSXLPKGPPXSXPPXL 869
P P GPP PP +
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGM 792
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/87 (22%), Positives = 21/87 (24%)
Frame = +3
Query: 609 PPXGXXXPPXXXXXPXXXTPXPPXPTSXXPXIXXXADXXXXXQAXXXXXXAXXRPXRTPX 788
PP PP P P PP P P I P P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI-TGGPPPPPPPGGLPPISGGPPPPPPPP 348
Query: 789 PXXEXHXPXPXXSXLPKGPPXSXPPXL 869
P P GPP PP +
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPPGM 375
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +1
Query: 574 PPHRPXPXXNPXPPXAXXXPPXEXXXPXPXLRXHPXXPXN 693
PP P P P PP P + P P + P N
Sbjct: 66 PPPPPPPMCPPPPPPMPSYSPCQSYAPAPVFNQYAMQPAN 105
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = -1
Query: 956 GGSXXGXXGGARXLGXFWVLAGGFXXGGLEXWXXGVXGAFGXXXXXWXGGMXLXXGXGCA 777
GG G GG G F GG GG+ G G G G + G
Sbjct: 522 GGGYGGGYGGPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGPPGRGGMANRRGRG 581
Query: 776 XRPXXG 759
RP G
Sbjct: 582 KRPGDG 587
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 520 PPXPXQKPAXXWAXRXXXPPHRPXPXXNPXPPXAXXXPPXEXXXPXP 660
PP P K + A PP P +P PP PP P P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPP 282
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 520 PPXPXQKPAXXWAXRXXXPPHRPXPXXNPXPPXAXXXPPXEXXXPXP 660
PP P K + A PP P +P PP PP P P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPP 303
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 520 PPXPXQKPAXXWAXRXXXPPHRPXPXXNPXPPXAXXXPPXEXXXPXP 660
PP P K + A PP P +P PP PP P P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPP 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,219
Number of Sequences: 27780
Number of extensions: 132937
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2709719642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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