Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_L10
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         29   4.4  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 419 PPPXXGGGXFFSPPXFXPPXKKXPP 493
           PPP    G   SPP   PP +K PP
Sbjct: 694 PPPPAPEGHMPSPPKSTPPVEKSPP 718



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 407 KKXIPPPXXGGGXFFSPPXFXPPXKKXPP 493
           K   PPP    G   SPP   PP +K PP
Sbjct: 624 KASSPPPPAPEGHTPSPPESTPPSEKSPP 652



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 407 KKXIPPPXXGGGXFFSPPXFXPPXKKXPP 493
           K   PPP    G   SPP   PP +K PP
Sbjct: 657 KASSPPPPTPEGHTPSPPKSTPPTEKSPP 685



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 419 PPPXXGGGXFFSPPXFXPPXKKXPP 493
           PPP    G   SPP   PP +K PP
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPP 751


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,174
Number of Sequences: 37544
Number of extensions: 113626
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)