Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L08
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 32 0.55
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 31 1.3
07_03_1028 - 23378140-23378802 31 1.7
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.7
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414... 30 2.9
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807... 30 2.9
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.8
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.8
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.0
06_03_0218 + 18219956-18220555 28 9.0
03_06_0149 - 31987183-31987630,31987813-31987874 28 9.0
03_04_0061 - 16949038-16950006 28 9.0
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 32.3 bits (70), Expect = 0.55
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +1
Query: 667 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCKVVRSK 771
RL D C P L+E WRFL+A A S RCK R+K
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKASRAK 887
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 627 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*GRSLQAGAVCTNP-- 794
P S+ + +PVPTLP++ + F G S H + R Y S GAV P
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 795 PFSPTAAP-YP 824
P P AAP YP
Sbjct: 342 PSYPPAAPSYP 352
>07_03_1028 - 23378140-23378802
Length = 220
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = -2
Query: 836 DDSYRIRRSGRAERGVRAHSPSLERTTLHRTEIPTA*-AMRKRHASRRE---KGGQVSGK 669
DD Y R S + ++ A + R +RT PT A R ++ E +GG + +
Sbjct: 72 DDDYAYRASKKKKQQAAAEQAA--RMPNNRTTRPTTRRASSSRSRTKEESHARGGGAAPR 129
Query: 668 RQGRNRRAHEGASRG-KRLVSL*SCRVSPPLT 576
R+ ++R+ G R +R ++ RV PP T
Sbjct: 130 RENKDRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 675
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>04_04_1016 -
30139691-30139951,30140066-30140134,30141267-30141470,
30141552-30141808,30141899-30141983,30142080-30142164,
30142269-30142795
Length = 495
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 905 WFGNPVPGXXPGXISRVLPGWTQDDSYRIRRSGRAERGVRAHSP 774
W GNP G + V+ DD + + R+GR ERGV A P
Sbjct: 83 WGGNPGSNTLLGDAATVI---CLDDYHSLDRAGRKERGVTALDP 123
>04_04_1009 -
30078988-30079248,30079363-30079431,30080564-30080767,
30080849-30081105,30081196-30081280,30081377-30081461,
30081566-30082092
Length = 495
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 905 WFGNPVPGXXPGXISRVLPGWTQDDSYRIRRSGRAERGVRAHSP 774
W GNP G + V+ DD + + R+GR ERGV A P
Sbjct: 83 WGGNPGSNTLLGDAATVI---CLDDYHSLDRAGRKERGVTALDP 123
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 152 HCILVVVCPNSSMYLIMSGSN*PSPKGRSAAA 57
HC + +VC +S+ L++S P+P ++AA
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAA 95
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 704 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 609
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 725 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 624
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 599 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 715
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,533,488
Number of Sequences: 37544
Number of extensions: 581501
Number of successful extensions: 1821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -