Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_L02
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.011
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.026
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.034
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.034
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.14
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.18
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.32
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.73
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.97
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.1
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.002
Identities = 38/148 (25%), Positives = 38/148 (25%), Gaps = 1/148 (0%)
Frame = +3
Query: 471 PPPPXGXGGXFLGXXXXXXXXXPXPPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXA 650
PPP G P PP PPP PP P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP-----PAI 395
Query: 651 PXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPX 830
P G P P PP P PP PP P PP P
Sbjct: 396 P-GRSAPALPPLGNASRTSTPPVPTPPSL---PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 831 SPPGXXXPPXPRG-GXPPPXXXLCPGAP 911
S P PP P G PP P P
Sbjct: 452 SAP--IAPPLPAGMPAAPPLPPAAPAPP 477
Score = 35.9 bits (79), Expect = 0.008
Identities = 31/129 (24%), Positives = 31/129 (24%), Gaps = 7/129 (5%)
Frame = +1
Query: 472 PPPPXGXGVXFWXPPPXPPPXXPXPXXXXXXXXXXXXXXXXXXXPXXXGXPRXKXFX--P 645
PPP PP P P P PR P
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Query: 646 XPPXG-----PPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPPPGGXXXXXXXXP 810
PP G PPPP P G P PPP G P
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Query: 811 XXPPAPXPP 837
PP P PP
Sbjct: 413 STPPVPTPP 421
Score = 32.7 bits (71), Expect = 0.078
Identities = 29/112 (25%), Positives = 31/112 (27%), Gaps = 9/112 (8%)
Frame = +3
Query: 576 PPPGGGXXXXPXXGXP---PXKTFXPXAPXGXPPPXXXPXXG------GVXPXGPPPPXX 728
PPP G P P + P PP P PPPP
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPP- 315
Query: 729 XXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRGGXPPP 884
PP PP G P PP P S P P+G PP
Sbjct: 316 -----PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Score = 32.7 bits (71), Expect = 0.078
Identities = 26/99 (26%), Positives = 27/99 (27%)
Frame = +3
Query: 543 PPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPP 722
PP G PP G P + P AP PP G P PP P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA-PAAPPLP 450
Query: 723 XXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPP 839
P P PP P PP P P
Sbjct: 451 PSAPIAPPLPAGMPAAPP-----LPPAAPAPPPAPAPAP 484
Score = 29.5 bits (63), Expect = 0.73
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 616 GXPRXKXFXPXPPXGPPPPXXXPXXGGFXPXAPPPP 723
G P P P PP P P P AP PP
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Frame = +3
Query: 702 PXGPPPPXXXXXXXPPPXXGGXX------PPRGXXXXXXXXPXXPPGPXSPPGXXXPPXP 863
P PPPP PP G PP P P G +PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 864 RGGXPPP 884
G PP
Sbjct: 371 STGRQPP 377
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 649 PPXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPP 774
PP P P P G P APP P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGM-PAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Frame = +1
Query: 616 GXPRXKXFXPXPPXGPP--PPXXXPXXGGFXPXAPPPPXXXXXXXPP 750
G P P PP P PP P P PPP PP
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.5 bits (78), Expect = 0.011
Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = -3
Query: 833 GXGAGGXXGXXXXXXXXPPGGGXPPXXGGGXXXXXXXGGGGAXGXNPPXXGXXXG--GGG 660
G GG G PPG G GG GG G G P G GGG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 659 PXGGXGXKXFXRGXPXXXG 603
P G G G P G
Sbjct: 244 PGGFGGGLGGFGGGPGGFG 262
Score = 33.9 bits (74), Expect = 0.034
Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Frame = -1
Query: 667 GGXPXGAXGXXVFXG----GXPXXGXXXXPPPGGGXXXPPPPXXGGXGXXGGG---XGGG 509
GG P G G F G G G GG P GG G GGG GGG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 508 PKXXPPXPXGGGG 470
P P G GG
Sbjct: 258 PGGFGGGPGGHGG 270
Score = 29.9 bits (64), Expect = 0.55
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 580 GGXXXPPPPXXGGXGXXGGGXGGGPKXXPPXPXGGG 473
GG PPP GG G GG G G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 29.1 bits (62), Expect = 0.97
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 547 GGXGXXGGGXGGGPKXXPPXPXGGGG 470
G G GG GGG PP P G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGG 209
Score = 29.1 bits (62), Expect = 0.97
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Frame = -1
Query: 583 GGGXXXPPPPXXGGXGXXG-----------GGXGGGPKXXPPXPXGGGG 470
GGG PPP G G G GG GGGP P G GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -2
Query: 828 GGRGXXGGXXXXXXXXPGG-GXPPXXXGGXXXXXXXGGGGGXXXKPPPXXGP 676
GG G GG PGG G P GG GG GG P GP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGG-GLGGFGGGPGGFGGGPGGHGGP 271
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = -3
Query: 836 GGXGAGGXXGXXXXXXXXPPGGGXPPXXGGGXXXXXXXGGGGAXGXNPPXXGXXXGGGGP 657
G G GG G GG P GG GG G G GGGP
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Query: 656 XGGXG 642
G G
Sbjct: 266 GGHGG 270
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.026
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +3
Query: 621 PPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXXGGXXPPRGXXXXXX 800
PP AP P P P GG P PPPP PPP G
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPPAVSAGGSRYYA 794
Query: 801 XXPXXPPGP 827
P P P
Sbjct: 795 PAPQAEPEP 803
Score = 33.5 bits (73), Expect = 0.045
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +1
Query: 622 PRXKXFXPXPPXGP-PPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPPP 777
P P P P P P P GG P PPPP PPP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPPP---PPPP 783
Score = 32.7 bits (71), Expect = 0.078
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +3
Query: 576 PPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPP 722
PPP P P P G PPP P GV GPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP--GVAGAGPPPP 778
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/68 (32%), Positives = 22/68 (32%)
Frame = +1
Query: 631 KXFXPXPPXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPPPGGXXXXXXXXP 810
K PP PPPP P PPP P GG PPP P
Sbjct: 726 KLLLKSPP--PPPPAVIVPTPAPAPIPVPPPA--------PIMGGPPPPPPPPGVAGAGP 775
Query: 811 XXPPAPXP 834
PP P P
Sbjct: 776 PPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 472 PPPPXGXGVXFWXPPPXPPP 531
PPPP GV PPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 472 PPPPXGXGVXFWXPPPXPPP 531
PPPP G PPP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +3
Query: 711 PPPPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRGGXPPP 884
PPPP P PP P PP P G PP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP---PAPIMGGPPPPPPPPGVAGAGPPPPP---PPPP 783
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +3
Query: 537 PXPPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXP 683
P P GG PPPG P PP + P P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.034
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +3
Query: 690 GGVXPXGP--PPPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXP 863
GG+ P P PP PP PP P PP P PP PP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Query: 864 RGGXP 878
P
Sbjct: 1737 ASSAP 1741
Score = 33.5 bits (73), Expect = 0.045
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 643 PXPPXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXG 762
P PP PPP P P APPPP P G
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +3
Query: 561 GGXXXPPPGGGXXXXPXXGXPPXKTFX--PXAPXGXPPPXXXPXXGGVXPXGPPPPXXXX 734
GG P P PP + P P PPP P P PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 735 XXXPPPXXG 761
P G
Sbjct: 1739 SAPSVPNPG 1747
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 652 PXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPP 774
P PPPP P P APP P PPP P
Sbjct: 1705 PTPPPPPMSVPP----PPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +3
Query: 807 PXXPPGPXS-PPGXXXPPXPRG--GXPPP 884
P PP P S PP PP P G PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.034
Identities = 31/117 (26%), Positives = 31/117 (26%), Gaps = 4/117 (3%)
Frame = +3
Query: 543 PPXXGGGGXXXPPPGGGXXXXPXX-GXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPP 719
P G P P P G PP AP P P P PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP-VPAPSGAPPVPKPSVAAPPV 1171
Query: 720 PXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPG--PXSPPGXXXP-PXPRGGXPP 881
P P P PP P G P PP P P P G PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 30.7 bits (66), Expect = 0.32
Identities = 24/111 (21%), Positives = 25/111 (22%)
Frame = +3
Query: 579 PPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXX 758
P G P PP P P P P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 759 GGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRGGXPPPXXXLCPGAP 911
G P+ P P P PP P PP G P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/97 (22%), Positives = 23/97 (23%), Gaps = 1/97 (1%)
Frame = +3
Query: 624 PXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXXGGXXP-PRGXXXXXX 800
P + P P P G PP P P G P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 801 XXPXXPPGPXSPPGXXXPPXPRGGXPPPXXXLCPGAP 911
P P P PP P PP AP
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +1
Query: 643 PXPPXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPPPGGXXXXXXXXPXXPP 822
P P PP P P P P P P P G PP
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 823 APXP 834
P P
Sbjct: 1104 VPKP 1107
Score = 28.3 bits (60), Expect = 1.7
Identities = 28/128 (21%), Positives = 29/128 (22%), Gaps = 3/128 (2%)
Frame = +3
Query: 537 PXPPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPP 716
P P G P G P PP P P P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 717 PPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPR--GGXPP-PX 887
P P P P P P P PP P+ G PP P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 888 XXLCPGAP 911
P P
Sbjct: 1194 PSEAPPVP 1201
Score = 27.9 bits (59), Expect = 2.2
Identities = 28/122 (22%), Positives = 28/122 (22%)
Frame = +3
Query: 537 PXPPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPP 716
P P G P P G PP P PP P P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 717 PPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRGGXPPPXXXL 896
PP P P G PP PP P PR P P
Sbjct: 1211 PPPSTAPPVPTPSAG--LPP-----VPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNA 1263
Query: 897 CP 902
P
Sbjct: 1264 SP 1265
Score = 27.5 bits (58), Expect = 2.9
Identities = 30/124 (24%), Positives = 30/124 (24%), Gaps = 3/124 (2%)
Frame = +1
Query: 472 PPPPXGXGVXFWXPPPXPPPXXPXPXXXXXXXXXXXXXXXXXXXPXXXGXPRXKXFXPXP 651
PP P PPP P P P P G P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIP--------SIPAPSGAPPVPAPSGIPPVPKPSVAA 1101
Query: 652 PXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXPP---PGGXXXXXXXXPXXPP 822
P P P P APP P P P G PP P PP
Sbjct: 1102 PPVPKPSVAVPPVPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 823 APXP 834
P P
Sbjct: 1161 VPKP 1164
Score = 27.5 bits (58), Expect = 2.9
Identities = 25/99 (25%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Frame = +3
Query: 579 PPGGGXXXXPXXGXPPXKTFXPXAPXGXP----PPXXXPXXGGVXPXGPPPPXXXXXXXP 746
P G P PP P P PP P G+ P P P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS-SGIPPV--PKPAAGVPPVP 1192
Query: 747 PPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXP 863
PP P P P P P PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAP-PVPTPSAGLPPVP 1230
Score = 27.1 bits (57), Expect = 3.9
Identities = 28/116 (24%), Positives = 28/116 (24%)
Frame = +3
Query: 537 PXPPXXGGGGXXXPPPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPP 716
P P P G P PP AP PP P G P PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-----APSSGIPPVPKPAAG--VPPVPP 1193
Query: 717 PPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRGGXPPP 884
P P PP PP P P PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV--PTAKAPPVPAPSSEAP 1247
Score = 25.8 bits (54), Expect = 9.0
Identities = 19/87 (21%), Positives = 19/87 (21%)
Frame = +2
Query: 575 PPPRGGXXXXPXXGGXPGKNXXXXGPXXXPPPXXGPXXGGGFXXXPPPPPXXXXKXXPPX 754
P P G P P P P P P P P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 755 XXGGXPPPGXXXXXXXXPPXXPRPPFP 835
G P P PP PP P
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
Frame = +1
Query: 604 PXXXGXPRXKXFXPXPPXGPPPPXXXPXXGGFXPXAPPPPXXXXXXXPPPXXGGXP---P 774
P P + P PP P P P P PPP P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 775 PGGXXXXXXXXPXXPPAPXPP 837
P P P P PP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
Score = 27.5 bits (58), Expect = 2.9
Identities = 25/102 (24%), Positives = 27/102 (26%), Gaps = 1/102 (0%)
Frame = +3
Query: 579 PPGGGXXXXPXXGXPPXKTFXPXAPXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXX 758
PP P PP + P +P PP P P PPP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPP---IPSKAPPIPSSLPPPAQPAAPVKSPPS 186
Query: 759 GGXXPPRGXXXXXXXXPXXPPGPXS-PPGXXXPPXPRGGXPP 881
P P PP P S P P PP
Sbjct: 187 APSLP----SAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +3
Query: 807 PXXPPGPXSPPGXXXPPX---PRGGXPPPXXXLCPGAP 911
P P P +P PP PR PPP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 649 PPXGPPPPXXXPXXGGFXPXAPPPP 723
PP PPPP P GF P + PPP
Sbjct: 5 PPGNPPPPPPPP---GFEPPSQPPP 26
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 703 PXAPPPPXXXXXXXPPPXXGGXPPPG 780
P PPPP PP PPPG
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 807 PXXPPGPXSPPGXXXPPXPRGGXPP 881
P PP P PPG P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 472 PPPPXGXGVXFWXPPPXPP 528
PPPP G PPP PP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 30.7 bits (66), Expect = 0.32
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -1
Query: 643 GXXVFXGGXPXXGXXXXPPPGGGXXXPPPPXXGGXGXXGGGXGGG 509
G + P G P GGG P GG G GGG GG
Sbjct: 92 GHRAYYAPPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGG 136
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 752 GGGXXXXXXXGGGGAXGXNPPXXGXXXGGGGPXGGXG 642
GGG G GGA G G G GG GG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.1 bits (62), Expect = 0.97
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +1
Query: 661 PPPPXXXPXXGGFXPXA-PPPPXXXXXXXPPPXXGGXPPPGGXXXXXXXXPXXPPAPXPP 837
PPPP A PPPP PP G PP P P AP P
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP--VQQPSHPNPYTPVAPQSP 965
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/39 (30%), Positives = 12/39 (30%)
Frame = +2
Query: 662 PPPXXGPXXGGGFXXXPPPPPXXXXKXXPPXXXGGXPPP 778
PPP PPPP PP G PP
Sbjct: 909 PPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP 947
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.9
Identities = 25/87 (28%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Frame = +3
Query: 651 PXGXPPPXXXPXXGGVXPXGPPPPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPX 830
P P P G PP PP G P P PPG
Sbjct: 474 PSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPN---LNMSQPPMVPPGMA 530
Query: 831 SPPGXXXPPXPRGGXPP-PXXXLCPGA 908
PPG P P G P P PGA
Sbjct: 531 LPPGM---PAPFPGYPAVPAMPGIPGA 554
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 577 GXXXPPPPXXGGXGXXGGGXGGGPKXXP 494
G PPPP G G G G GG P P
Sbjct: 72 GNAAPPPP--GAEGGPGAGFGGFPGAGP 97
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.1
Identities = 22/94 (23%), Positives = 22/94 (23%), Gaps = 6/94 (6%)
Frame = +1
Query: 511 PPPXPPPXXPXPXXXXXXXXXXXXXXXXXXXPXXXGXPRXKXFXPXPPXGPPPPXXXPXX 690
PPP PPP P K P P PPPP P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQ 249
Query: 691 GGFXPXAPPPP------XXXXXXXPPPXXGGXPP 774
P P PPP PP
Sbjct: 250 STNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Frame = +3
Query: 714 PPPXXXXXXXPPPXXGGXXPPRGXXXXXXXXPXXPPGPXSPPGXXXPPXPRG---GXPPP 884
PPP G P G P GP G PP P G G PPP
Sbjct: 83 PPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,439
Number of Sequences: 5004
Number of extensions: 44752
Number of successful extensions: 395
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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