Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K24
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   2.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.9  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.9  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 733  ASYSASIQEYCSASDSDGDSVKLGXNGECTRXTXTXTVEKLPLWR 867
            A  S  IQ    ++ S GD  +L   G     T T T +K   WR
Sbjct: 1037 AGASVEIQNNIESASSGGDKTQLNGPGADQPVTATITFDKTSPWR 1081


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 330 TNACSPCCLVGSTATDMCSATRPPPTGSACTTMPT 434
           + +C+P  ++  T +   S + PPPT     T+PT
Sbjct: 167 STSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPT 201


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 597 LHTSRETPHDVMCVFSVRCKRXFGTRTVFSDSTRSIQTNRREI 725
           +H S E  + V+C+FS+  +R  G  ++F+     IQ   + I
Sbjct: 132 IHISGEDKYKVLCLFSI-WRRKLGKCSIFTVHDPDIQKKIKSI 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,426
Number of Sequences: 5004
Number of extensions: 57395
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)